FMO03624.5prime Sequence
1225 bp (1017 high quality bases) assembled on 2008-08-11
> FMO03624.5prime
TATAGCATACATTATACGAAGTTATCAGTCGACATGCCGCCCAAGAAGCA
CGACGAACCGGAGCGCAAGCCGCTGATCGGCAGAATTGGAACGAATCTGA
GAATCGGTATCGTTGGCGTTCCCAACGTGGGCAAGTCCACTTTTTTCAAC
GTTCTGACCCAAAGTGCCGCCCCCGCGGAGAACTTCCCCTTCTGCACCAT
CAAGCCGAATGAGAGTCGTGTTCCGGTGCCCGATGAGCGTTTCGATTACC
TGGTGGAGTACCACAAGCCGGCCAGTGTGGTTCCTGCCTATTTGAACGTC
GTGGACATTGCTGGCTTGGTGAAGGGAGCCGCCGAGGGTCAGGGACTTGG
CAACGACTTCCTCTCGCACATCAGCGCCTGCGATGCCATTTTCCACTTGT
GCCGCGCCTTCGAGGATCCGGATGTGACCCACGTGGAGGGCGAGGTGGAT
CCGGTGCGCGATCTGGAGATCATCTCCGAGGAGCTGCGCCTCAAGGCCGA
GGAGAATCTGCTCAAGAACTTGGACAAACTGGAGAAGGTGGTGGCCCGCG
GCGGCGACAAGAAGCTCAAGCCCGAATACGATTCGATGCTTAAGATTAAG
GATATCCTTATCGATCAGAAGCGTCATCTGCGCTTCGAGGACTGGAATGC
CCATGATATTGAGGCCTTGAACAAGTATCTGTTCCTGACCTCCAAACCGG
TCATCTACCTGGTGAACCTTTCGGACAAGGACTTCATCCGCAAGAAGAAC
AAGTGGCTGCCGAAGATCAAGGAATGGATCGACAAGAACGATCCCGGAGC
ACTGCTCATTCCCTTCTCCGGCGCCTTCGAGCACCAGCTGACCGAAAAGG
ACGAACTGGAGCGCAAGGCCTACGAGACGGAGACCAAGTGCAAAAGTATG
CTGGAGAAGATCGTTGTGACCGGCTACAAGGGACTGCAGCTGGAGTACTC
TTCACCGCCGGGCCGGATGAAGTGAAGCCTGGAACATCCAGAAGGCACCA
GGCTCCCAGGCTGCCGGACCGCATTCCCACCGACTTCGAGAAGGCTTCAT
ATGGCCGAGGTGATGCCACTTCAAGACTCAAGGCGGAAGGCAGTGAGGCG
ATGCAGGCGCTGCAAATATCGCCAAGACGCAACTACACGTCGAGGAATGG
CAACTCAATCTTAAGTCCACGCCCGGGCCTGGCCTAGGGAATGCAAGGAG
AACGCAGCCTCTCTGAACCACGTGC
FMO03624.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1354-RE | 1491 | CG1354-RE | 105..1234 | 34..1146 | 5100 | 97.7 | Plus |
| CG1354-RA | 1498 | CG1354-RA | 115..1244 | 34..1146 | 5100 | 97.7 | Plus |
| CG1354-RD | 1684 | CG1354-RD | 125..1254 | 34..1146 | 5100 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9780509..9780892 | 274..657 | 1905 | 99.7 | Plus |
| X | 23542271 | X | 9781159..9781609 | 658..1101 | 1675 | 96 | Plus |
| X | 23542271 | X | 9779062..9779242 | 34..214 | 905 | 100 | Plus |
| X | 23542271 | X | 9780241..9780301 | 215..275 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:25:55 has no hits.
FMO03624.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:51 Download gff for
FMO03624.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1354-RD | 115..1265 | 24..1157 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:18:02 Download gff for
FMO03624.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1354-RA | 101..1251 | 24..1157 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:54 Download gff for
FMO03624.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1354-RD | 115..1265 | 24..1157 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:54 Download gff for
FMO03624.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9779052..9779246 | 24..218 | 96 | -> | Plus |
| X | 9780245..9780301 | 219..275 | 100 | -> | Plus |
| X | 9780511..9780892 | 276..657 | 99 | -> | Plus |
| X | 9781159..9781675 | 658..1157 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:51 Download gff for
FMO03624.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9673085..9673279 | 24..218 | 96 | -> | Plus |
| arm_X | 9674278..9674334 | 219..275 | 100 | -> | Plus |
| arm_X | 9674544..9674925 | 276..657 | 99 | -> | Plus |
| arm_X | 9675192..9675708 | 658..1157 | 94 | | Plus |
