FMO03625.5prime Sequence
862 bp (862 high quality bases) assembled on 2008-08-11
> FMO03625.5prime
ATAGCATACCTTATACGAAGTTATCAGTCGACATGTCCTCCCGACGCAGC
TCCTTCAGGCGGAGGGAGAAGCCGGCCTTCGAGCGCTTTAAGGACCACTG
CCGCCACTTCACGGCGTTCATGTTCAGCAACGTGGGCATCATTCTACTGG
TCACATTTTATATTATCGGCGGAGCGTTCATATTCCAGAGCATCGAGATT
TTCGAGTACGAGCGGCTCAAGTCGGAGAAGCCGCACCGGTTTATAGCACG
GAACTTCAGTGGCGAGTGCCTCAGCCGCATATGGGAGTTGACGGCGGAGA
ACATCAGCTTCTTCGACCACCACGCCTACAGGAGACGGGTGAACGATGTG
CTTCTGGATTATCAGAGGGCCATAGTGAAAAAGCAGCTGAAGGGACCCGA
CGTGGAGCAGTGGAGCTTCTCCGGAGCTTTTCTCTACTCACTGACGGTGA
TCACGACCATCGGGTACGGGAACATTACGCCGCACTCCGAGTGCGGAAAG
CTGGTGACCATTCTATATGCGATAATTGGCATGCCGCTGTTCTTGCTCTA
CCTGTCCAACATTGGAGACGTCCTGGCCAAGTCCTTCAAGTGGATATACT
CGAAGGTGTGCCTATGTCGCATCTGCCCCGGCGTGGCCAAGCGCCGGATA
ATCCCGCGAGAGACGAAAAATGCGACAGTTGGTCAGAGCGCTCCAGATGC
ACGACATGGAGAATGCCCGGGGAAGCATCAGCTACACTAGCACCAGCAGT
ACCACCTCCTCCAACAGCAGCAGTAGCGAATACACCAGAGTTCCCGCCAG
AGTTCCAGCCTCGTGGATATTCAGTACACCGAGTCTGATTCGGATATCGA
GCGGTGAAATTA
FMO03625.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:58:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8713-RA | 1978 | CG8713-RA | 603..1432 | 30..860 | 4055 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:58:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8095595..8095947 | 337..690 | 1705 | 99.4 | Plus |
| 2R | 25286936 | 2R | 8095211..8095519 | 30..338 | 1545 | 100 | Plus |
| 2R | 25286936 | 2R | 8096013..8096178 | 690..854 | 765 | 98.8 | Plus |
Blast to na_te.dros performed 2014-11-28 22:58:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6831..6894 | 724..787 | 158 | 71.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2717..2850 | 668..809 | 151 | 59.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1539..1625 | 726..810 | 150 | 66.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1093..1158 | 722..787 | 150 | 69.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2304..2391 | 723..809 | 149 | 64.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6799 | 724..788 | 145 | 69.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2369..2435 | 722..791 | 136 | 68.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6756..6809 | 724..777 | 135 | 72.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2326..2390 | 724..788 | 127 | 66.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6802..6865 | 722..788 | 121 | 67.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6768..6851 | 724..809 | 119 | 61.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6778 | 735..788 | 108 | 66.7 | Plus |
FMO03625.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:11:22 Download gff for
FMO03625.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8713-RA | 600..1432 | 25..861 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:17:37 Download gff for
FMO03625.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8713-RA | 598..1430 | 25..861 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:46:03 Download gff for
FMO03625.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8713-RA | 600..1432 | 25..861 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:46:03 Download gff for
FMO03625.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8095208..8095518 | 25..337 | 99 | -> | Plus |
| 2R | 8095596..8095947 | 338..690 | 99 | -> | Plus |
| 2R | 8096014..8096183 | 691..861 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:11:22 Download gff for
FMO03625.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3982713..3983023 | 25..337 | 99 | -> | Plus |
| arm_2R | 3983101..3983452 | 338..690 | 99 | -> | Plus |
| arm_2R | 3983519..3983688 | 691..861 | 97 | | Plus |
