FMO03627.5prime Sequence
881 bp (881 high quality bases) assembled on 2008-08-11
> FMO03627.5prime
TCGTATAGCATACATTAAACGAAGTTATCAGTCGACATGGCCAGAAGACC
AGAGCATTCGGCGCCGCCAGAAATTTTCTACAACGATGATGAGGCCAAGA
AATATTCCACAAACACCCGCATCATTGAGATCCAAGTAGAAATGGCCGAA
CGTGCCTTGGAACTATTGGCGCTCCCGGATGATGATGAGTCTCGGTTGAT
TTTGGACATCGGCTGTGGTTCTGGACTCTCAGGTAGCGTTCTTGAGGACA
GCGAGCACATGTGGATCGGCATAGATATTTCCAAGTCTATGCTCGATATC
GCCGTGGAACGCGAGGTTGCTGGGGATGTCATTCTGGGAGACATGGGCGA
GGGAATGCCCTTTAAGCCGGGCACTTTCGACGGCGCCATCTCGATCTCTG
CCCTCCAATGGCTCTGCAATGCGGACAAGTCGTATCACAATCCCCACAAG
CGCCTGCTGAAGTTCTTTACCACCTTGTTTTCCTGTCTGACACGCACCGC
GCGAGCTGTCTTTCAATTTTATCCGGAGAACTCCGATCAGATCGAGATGG
TAACCTCGCAAGCCATGAAGGCGGGATTCTACGGAGGATTGGTTGTCGAC
TATCCAAACTCTGCCAAGGCTAAGAAGTACTACCTGGTGCTCATGACTGG
AGGATCTGCTGAGCTGCCGCAGGCTTTGGGCTCACCTGAAGAGGAACGTC
GTGTAAACTATATAAAGAAACGTGATGCTTGCCGTGAGGCTCGGGGAAAA
GCGCCAAAGAAATCCCGCGATTGGATCCTAGCCAAGAAAGAGCGTCGACG
TCGCCAGGGGTTGGAAACCCGTCCTGACACAAAGTACACTGCACGCAGCG
CAGCGGCAAATTTGCAAGCTTTCTAGACCAT
FMO03627.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:32:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10903-RB | 1164 | CG10903-RB | 158..985 | 37..863 | 4115 | 99.9 | Plus |
| CG10903-RA | 1124 | CG10903-RA | 118..945 | 37..863 | 4115 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:32:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8031146..8031712 | 114..680 | 2835 | 100 | Plus |
| 3R | 32079331 | 3R | 8031781..8031966 | 679..863 | 880 | 99.5 | Plus |
| 3R | 32079331 | 3R | 8030944..8030982 | 37..75 | 195 | 100 | Plus |
| 3R | 32079331 | 3R | 8031046..8031083 | 76..113 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:32:25 has no hits.
FMO03627.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:13 Download gff for
FMO03627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10903-RA | 116..949 | 34..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:16:01 Download gff for
FMO03627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10903-RA | 114..947 | 34..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:55 Download gff for
FMO03627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10903-RA | 116..949 | 34..867 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:55 Download gff for
FMO03627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8030943..8030982 | 37..75 | 97 | -> | Plus |
| 3R | 8031046..8031083 | 76..113 | 100 | -> | Plus |
| 3R | 8031146..8031711 | 114..679 | 100 | -> | Plus |
| 3R | 8031782..8031970 | 680..867 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:13 Download gff for
FMO03627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3856665..3856704 | 37..75 | 97 | -> | Plus |
| arm_3R | 3856768..3856805 | 76..113 | 100 | -> | Plus |
| arm_3R | 3856868..3857433 | 114..679 | 100 | -> | Plus |
| arm_3R | 3857504..3857692 | 680..867 | 98 | | Plus |
