FMO03629.5prime Sequence
441 bp (441 high quality bases) assembled on 2008-08-11
> FMO03629.5prime
AGCATACATTATACGAAGTTATCAGTCGACATGAAGTTCCTGATTGTCCT
CTCCGTCATTTTGGCCATTTCGGCTGCTGAGCTGCAACTATCCGATGAGC
AGAAGGCTGTGGCCCATGCCAATGGCGCCCTTTGTGCCCAGCAGGAGGGA
ATCACCAAGGATCAGGCGATCGCCTTGCGAAACGGCAATTTCGATGACAG
TGACCCCAAGGTGAAATGCTTCGCCAATTGTTTCTTGGAGAAAATCGGAT
TCCTGATCAATGGTGAGGTCCAGCCCGATGTCGTTCTGGCCAAGTTGGGA
CCCCTGGCCGGCGAGGATGCCGTGAAGGCCGTTCAGGCCAAGTGTGATGC
CACCAAGGGAGCGGATAAGTGCGATACTGCCTATCAGCTATTCGAGTGCT
ACTACAAGAATCGCGCCCACATCGCAAGCTTTCTAGACCAT
FMO03629.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp56d-RB | 922 | CG11218-RB | 166..558 | 31..423 | 1965 | 100 | Plus |
| Obp56d-RA | 591 | CG11218-RA | 50..442 | 31..423 | 1965 | 100 | Plus |
| Obp56e-RB | 529 | CG8462-RB | 164..441 | 142..419 | 250 | 72.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19703288..19703632 | 423..79 | 1725 | 100 | Minus |
| 2R | 25286936 | 2R | 19712567..19712844 | 142..419 | 250 | 72.7 | Plus |
| 2R | 25286936 | 2R | 19703702..19703750 | 79..31 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:37:36 has no hits.
FMO03629.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:08 Download gff for
FMO03629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp56d-RA | 50..447 | 31..429 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:17:38 Download gff for
FMO03629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp56d-RA | 46..443 | 31..429 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:20:24 Download gff for
FMO03629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp56d-RA | 50..447 | 31..429 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:20:24 Download gff for
FMO03629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19703283..19703632 | 79..429 | 99 | <- | Minus |
| 2R | 19703703..19703750 | 31..78 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:08 Download gff for
FMO03629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15590788..15591137 | 79..429 | 99 | <- | Minus |
| arm_2R | 15591208..15591255 | 31..78 | 100 | | Minus |
