FMO03632.5prime Sequence
963 bp (963 high quality bases) assembled on 2008-08-11
> FMO03632.5prime
CAGTCGACATGTCGCTCTCCCGCCTGAACACTCTGATGAAACTAACGCCC
AAGCCCACGGCCATCGGATCCCTTAAGATGCAGAGAAACCTTTCCGCCCT
CCCGGAATCCGGACCCACCGGCTCTTTCAAGACGCTGGCCGTCAGTTCGC
CCAAGCCGTTCGTCTTTCATGTGGAGCTCCATCGGCCCAGCAAGTTCAAC
GCCATAAGCAAGCAGATGTGGCTGGAGATCAAGGAGTGCTTCGACGGACT
GGCCACTAATCCCGACTGCCGGGCTATCGTTTTGTCCGCCTCCGGAAAGC
ACTTCACCGCCGGCATCGACCTCAACGACATGATAAACGTGGGCCAAACG
CTGGCCGAGACCGATGACTACGCCCGCAAGGGCGTCTCCATGGAGCGAAT
GATCAAGGTGTACCAGGACTCAATCAGCAGCCTGGAGCACTGCCCCAAGC
CGGTCATCACGGCGGTGCACAAGGCGTGCATCGGCGCCGGCGTGGACCTG
ATTACCGCCGCCGACATTCGCTACTGCACCGAGGACGCCTTTTTCCAGGT
CAAGGAGGTGGACATCGGCATGGCCGCCGACGTGGGCACCCTGCAGCGTC
TGCCCAAGGCAGTGGGCAGTCAGTCCCTCGCCCGCGAGCTGTGCTTCACT
GGGCGCAAATTCGAGGCCGCCGAGGCCCACTCCTCGGGCCTGGTGAGTCG
CCTCTTCCCAGACAAGGATTCCCTGCTGACCGGAGCCCTGGCCGTGGCCG
AGCTCATCGCTAGCAAGAGTCCCGTCGCCGTAAAGACAACCAAGGAGAGC
CTCGTGTACTCCCTGGAGCACACCAATCAAGAGGGCTTGGATCACATTCT
CCTGCTGAACAAGCTCAACCTGCTGTCGGAGGACTTCGCCCAGGCTGTGG
CCGCCCAGTTGACGAATGAACGATAAGCCAGTTGTTCGCCAGCTGGCAAG
CTTTCTAGACCAT
FMO03632.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9577-RA | 1131 | CG9577-RA | 93..1023 | 9..941 | 4600 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20167191..20167815 | 224..848 | 3125 | 100 | Plus |
| X | 23542271 | X | 20166956..20167120 | 60..224 | 825 | 100 | Plus |
| X | 23542271 | X | 20167882..20167964 | 849..932 | 355 | 97.6 | Plus |
| X | 23542271 | X | 20166765..20166816 | 9..60 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:07:16 has no hits.
FMO03632.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:03:10 Download gff for
FMO03632.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9577-RA | 86..1028 | 3..945 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:16:27 Download gff for
FMO03632.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9577-RA | 84..1026 | 3..945 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:38:45 Download gff for
FMO03632.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9577-RA | 86..1028 | 3..945 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:38:45 Download gff for
FMO03632.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20166758..20166816 | 3..60 | 93 | -> | Plus |
| X | 20166957..20167119 | 61..223 | 100 | -> | Plus |
| X | 20167191..20167815 | 224..848 | 100 | -> | Plus |
| X | 20167882..20167977 | 849..945 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:03:10 Download gff for
FMO03632.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20060791..20060849 | 3..60 | 93 | -> | Plus |
| arm_X | 20060990..20061152 | 61..223 | 100 | -> | Plus |
| arm_X | 20061224..20061848 | 224..848 | 100 | -> | Plus |
| arm_X | 20061915..20062010 | 849..945 | 95 | | Plus |
