FMO03637.5prime Sequence
604 bp (604 high quality bases) assembled on 2008-08-11
> FMO03637.5prime
AAGTTATCAGTCGACATGATGAACTTGCTGGTGGTGAAGGAGAGCGGCGA
GCGGATCGCCGACATCAGCTGTAGCCAGGAGCATACTACCAAATTTTCAC
CAAAATTGTCCCAAGTAGCCAAACATCGCAAGCTGGCGCAGCTCGAGATT
GCATCAGGTTCGGGATTGGTGGGATTAGGAACGGGAACTGGTACCGGAAG
TGGGTGTGGTCCAGCTATTCGGTGGCAGCTATTGCTACTGCTCTTGCTCG
GTAACTGCATTGATCTTACCGTTTCGAACAAAATCTCCTCAGTGGGCGCC
TTCAAGCCGGACTTTGTGATTCCGCTGGAGAACGTGACCATCGCCCAAGG
TCGGGACGCGACCTTCACGTGCGTGGTGAACAACCTCGGTGGTCATCGGG
TGAGTGGTGACGGTTCGTCAGCCCCAGCCAAGGTATGTATCGGTTTCAAG
CGCAGCGTTGAATTCTCAACTTCCGTTCCGTTTCGATTAGTTCCGGTTCG
TTTCGTTTCGTTTCAACTCCTTTCGTTTTGTCCCCGATCTCTTTCGTTCT
GTTTGATTTGTCATTTCAAGTGCACAAATATGCATAGCAAGCTTTCTAGA
CCAT
FMO03637.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42343-RE | 1472 | CG42343-RE | 246..815 | 16..586 | 2815 | 99.6 | Plus |
| CG42343-RD | 1557 | CG42343-RD | 331..900 | 16..586 | 2815 | 99.6 | Plus |
| CG42343-RF | 4386 | CG42343-RF | 246..664 | 16..434 | 2080 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21441440..21441755 | 577..262 | 1565 | 99.7 | Minus |
| X | 23542271 | X | 21442422..21442668 | 262..16 | 1235 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 19:36:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1098..1137 | 248..207 | 106 | 76.2 | Minus |
FMO03637.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:30 Download gff for
FMO03637.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42343-RD | 324..905 | 8..593 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:16:41 Download gff for
FMO03637.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42343-RD | 320..901 | 8..593 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:52 Download gff for
FMO03637.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42343-RD | 324..905 | 8..593 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:52 Download gff for
FMO03637.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21441427..21441754 | 263..593 | 98 | <- | Minus |
| X | 21442422..21442675 | 8..262 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:30 Download gff for
FMO03637.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21312454..21312781 | 263..593 | 98 | <- | Minus |
| arm_X | 21313449..21313702 | 8..262 | 98 | | Minus |
