Clone FMO03639 Report

Search the DGRC for FMO03639

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:36
Well:39
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG10874-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO03639.5prime Sequence

1003 bp (930 high quality bases) assembled on 2008-08-11

> FMO03639.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGAGCCCAACGA
TGAGGTGGTGGAGCGACAGAAGCTGGTGAACGACGTGGAAACGGAGGAGG
AAGCCCAAAGCGCACCGAAATCGGCCACACCCGCCTCGCCCGCCGTTCCG
AATATCAAAATCAAAGGCATATCCAGCGGCGAGACCACTCGCAGCAGAAA
CTCGGCCTCCTGCTCCATCGAGAGGACGATATCCGAAAAGGAGAAGGACA
AGAGCCAGGGCCAGGGTCAAGCGGCCACCAAGGTGACCTATGTGAATGAG
CGCCGGCCACGCCCGCAGGCGCACGGCGGCAGTGGCGGGGGTGCCGGCGA
CGAAAGATTCGAGTTCAAGACCCGGCCGCGCAAACTCCTGAAAGATCGTG
ATGAGTTGGAACCCACCACCAACAGTGCCAACAGCCTGAACGCCATCACC
TTGGTGAGCAGCGAGTGGCTAGCACCTGATCCCACAGCCACAGACAATCA
CAACACCCCCAAGAACAACAACAACGATAGCACGAAACCCAACAATAACA
ATCAGCACAGCAATAGCAATCAGAACACACCGCGATTGCAGCGCCGCAAG
AATCCCACAGCGTCGATGCCAAACGCCAGTGCCCACAGCGATAAGTTCGA
CGATCGTCCAATAAAACATCATTCCTTTGTCTCCGAAGTTCCCGATGTTA
AGCACATGGAAAGAGCTCTCCTCGGACTGCTGGACGACTTTCACTCCGGC
AAGCTGAGGGCATTCGGCTCCGGCTGCACAATGGACCAGATGACCAAGAT
TCGCGAGCAGCATGAGAGCCTGGCCAAATTGCATTTCGAACTGGCTGCCG
CCGAGGAGGATTCGCTGGAGCACGGCAACGAGTTCAACACCAACAAGGCG
CAGAGAACATGCTGCAGCTGATGCAGCTGTCTGGAACAGCTATCCATCTC
CATCGAGCAGCTGCATGACGAGCCACACTGGTCTCGCAAGCTATCTAGAC
CAT

FMO03639.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:34:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG10874-RA 1583 CG10874-RA 124..1071 37..985 4630 99.4 Plus
CG10874-RD 1586 CG10874-RD 124..1074 37..985 4590 99.1 Plus
CG10874-RC 1292 CG10874-RC 124..481 37..394 1790 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:34:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2190706..2191080 767..393 1875 100 Minus
2L 23513712 2L 2191850..2192090 394..154 1205 100 Minus
2L 23513712 2L 2190426..2190644 985..766 910 97.3 Minus
2L 23513712 2L 2192147..2192263 153..37 585 100 Minus
Blast to na_te.dros performed 2014-11-28 19:34:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2316..2474 414..569 201 62.7 Plus
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 2492..2681 383..569 176 57.6 Plus

FMO03639.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:31 Download gff for FMO03639.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10874-RA 115..1071 27..985 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:18:06 Download gff for FMO03639.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10874-RA 101..1057 27..985 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:03 Download gff for FMO03639.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10874-RA 115..1071 27..985 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:03 Download gff for FMO03639.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2190707..2191078 395..766 100 <- Minus
2L 2191850..2192090 154..394 100 <- Minus
2L 2192147..2192272 27..153 97   Minus
2L 2190426..2190643 767..985 97 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:31 Download gff for FMO03639.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2190426..2190643 767..985 97 <- Minus
arm_2L 2190707..2191078 395..766 100 <- Minus
arm_2L 2191850..2192090 154..394 100 <- Minus
arm_2L 2192147..2192272 27..153 97   Minus