FMO03640.5prime Sequence
1052 bp (1052 high quality bases) assembled on 2008-08-11
> FMO03640.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAATGCCACC
TCGCCAAAGTCATCGCTGGTCAAGTTGGGTCTGCATACCAATAAACAAAA
GACTCTGAAGGTTATGGTCCTGGGCCAAAGTGGTGTGGGAAAAACGGCCA
TGGTGGTGCGTTTTATTACCCGACGCTTCATTGGCGAGTATGATCCTAAT
CTGGAGAAGATTTACACCTGCCAAACCACGCTGGACAAGGAGCAGATTCA
GTTTGACATTCTGGACGCCACCGGTCAGCTACAAGAACTAGATGGAGTTA
GTCTGGAGTCCAACATCCGCTGGGCCGACGCATTTATACTAATGTACTCC
ATTACGGACAAGTGTTCCTTCGACGAGTGCAGTCGCCTAAAGTTCCTCAT
CAATTACAATAAACGAAGACGCAAGTTGGGCTCGGCCAGTAAAGAATACG
CACTGGATATTCCTGTCATACTGGTGGGCAATAAGACAGATCAGCCGGGC
GATCGAATGGTCAGCTTGGAAGAGGGTCAGCGCCGATTCAGGGAGTTATC
CTGCTCCTGTTTTCACGAGATTTCCGTCAGAGAGAGCGTGGATCAAGTGC
AGAATGTTTTTCGCGATGTGTTTCGCTTCTGGCGAGTCTTCAGCAAATTC
CCCAAGCTCAAGCGCTCCACCAGCGATGTGGCCAATACGGATGGAATCCT
CACGCCCGATTCGGGATCCTGTTCCTTCTACGATGCCTCGTCTTTGGGCG
TCGGTCGACATTCCTTTCTGGTCATCGGAAGCGCCTGTTTGGAGGAGAGC
AACGGTGACCATACGGAGTCTACGGATGAGATTACGAGTAGCAGTTTGAG
CAGCTCACGCAGCGACATCGATGCTCCCTTCCGTAGTAGAGCTTCGACGG
ACGGCACCCTGTTGTCCCGACCACGTAGATGGCGGTATCCACCGCCGGGA
TGCCTGCTGCCACACACGAATCGCGTGAGCGACGGATGAGCATTTCACAG
GGGCAGTAATGCCAGTACGCAAGCTTCTAGATCATTCGTTTGGCCGCGCG
GG
FMO03640.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5160-RB | 1173 | CG5160-RB | 95..1076 | 38..1016 | 4835 | 99.7 | Plus |
| CG5160-RA | 1613 | CG5160-RA | 535..1516 | 38..1016 | 4835 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7391081..7391503 | 1016..597 | 1985 | 99.1 | Minus |
| 2L | 23513712 | 2L | 7391860..7392019 | 444..285 | 800 | 100 | Minus |
| 2L | 23513712 | 2L | 7391644..7391798 | 598..444 | 775 | 100 | Minus |
| 2L | 23513712 | 2L | 7392075..7392213 | 285..147 | 695 | 100 | Minus |
| 2L | 23513712 | 2L | 7392274..7392383 | 147..38 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:08:18 has no hits.
FMO03640.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:03:51 Download gff for
FMO03640.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5160-RA | 526..1516 | 26..1016 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:17:39 Download gff for
FMO03640.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5160-RA | 179..1169 | 26..1016 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:15 Download gff for
FMO03640.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5160-RA | 526..1516 | 26..1016 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:15 Download gff for
FMO03640.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7392274..7392392 | 26..147 | 96 | | Minus |
| 2L | 7391081..7391503 | 597..1016 | 99 | <- | Minus |
| 2L | 7391646..7391798 | 444..596 | 100 | <- | Minus |
| 2L | 7391861..7392019 | 285..443 | 100 | <- | Minus |
| 2L | 7392076..7392212 | 148..284 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:03:51 Download gff for
FMO03640.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7391081..7391503 | 597..1016 | 99 | <- | Minus |
| arm_2L | 7391646..7391798 | 444..596 | 100 | <- | Minus |
| arm_2L | 7391861..7392019 | 285..443 | 100 | <- | Minus |
| arm_2L | 7392076..7392212 | 148..284 | 100 | <- | Minus |
| arm_2L | 7392274..7392392 | 26..147 | 96 | | Minus |
