FMO03641.5prime Sequence
967 bp (967 high quality bases) assembled on 2008-08-11
> FMO03641.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCTAATTTTGA
GTTGGGCAATCCAAAGAAAGCCGCAAGACTACTGAGTCAGATCCTTGAAT
CGCAACCAACACATTCCGCCCAGCAAACTCAAAAGTATCTGGAGAGCAGG
GTGCCAGGAAAGAATGTCCAGGAGACGAAACCCTCTTGGTTTTCCAACTA
TACTAGGTTATGCCAGGGCAGAAGATTGCCCGAAGAGCGAAGTGGTGATC
CCTTAAGATGCTACCTGGATGGAAAACGCCATGCTTACTTCACCTTGGCT
CCACTTCAAGTGGAACCGGTACACTTGGATCCGGATATAAATGTTTATCA
CGGAATGCTGAGCTCCAAACAGATTTTGTCCATCTTCGAGGAAGCGGACA
AGGAGGAGATGGTTAGGTCCGCTGTGGCCGGAAGTGGTGGAGAAGGCACC
GTGAGGGACTTGCGGGTCAGTCAGCAAACCTGGCTCGACTACAAGTCCCC
GGTGATGAATTCCGTAGGTCGGATCATCCAGTTTGTATCTGGATTCGATA
TGGCCGGAGCGGAGCATATGCAGGTGGCCAACTACGGAGTTGGAGGGCAG
TACGAGCCGCATCCGGATTACTTTGAGGTCAATCTGCCGAAGAACTTCGA
AGGAGATCGCATCTCCACCAGCATGTTTTATCTTTCTGATGTGGAACAAG
GAGGTTATACTGTCTTCACCAAGCTTAATGTGTTCCTGCCTCCTGTCAAA
GGAGCTCTGGTCATGTGGCACAATCTTCATCGATCCCTGCATGTGGATGC
TCGCACTTTGCATGCTGGCTGTCCAGTTATCGTGGGTTCCAAGCGGATTG
GCAACATCTGGATGCACTCGGGATACCAGGAGTTCCGTCGTCCCTGCAAC
CTCACCTCAGATAGCTACAGTCGCTAGCCTATCGAGATGCAAGCTTTCTA
GACCATTCGTTTGGCGC
FMO03641.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:58:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PH4alphaSG2-RA | 1683 | CG1546-RA | 744..1647 | 36..938 | 4495 | 99.9 | Plus |
| PH4alphaMP-RA | 1882 | CG9726-RA | 1744..1835 | 938..848 | 435 | 98.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:58:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30490924..30491569 | 36..681 | 3230 | 100 | Plus |
| 3R | 32079331 | 3R | 30491626..30491791 | 682..847 | 830 | 100 | Plus |
| 3R | 32079331 | 3R | 30491860..30491951 | 848..938 | 410 | 98.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:58:16 has no hits.
FMO03641.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:11:05 Download gff for
FMO03641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PH4alphaSG2-RA | 734..1647 | 23..938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:16:53 Download gff for
FMO03641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PH4alphaSG2-RB | 784..1697 | 23..938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:45:53 Download gff for
FMO03641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PH4alphaSG2-RA | 734..1647 | 23..938 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:45:53 Download gff for
FMO03641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30490914..30491569 | 23..681 | 99 | -> | Plus |
| 3R | 30491626..30491791 | 682..847 | 100 | -> | Plus |
| 3R | 30491860..30491951 | 848..938 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:11:05 Download gff for
FMO03641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26317348..26317513 | 682..847 | 100 | -> | Plus |
| arm_3R | 26317582..26317673 | 848..938 | 98 | | Plus |
| arm_3R | 26316636..26317291 | 23..681 | 99 | -> | Plus |
