FMO03642.5prime Sequence
844 bp (844 high quality bases) assembled on 2008-08-11
> FMO03642.5prime
GTATAGCATACCTTATACGAAGTTATCAGTCGACATGGCTCGCCGCTATG
ATTCCCGCACCACGATCTTCTCGCCGGAGGGCCGTTTGTACCAGGTGGAG
TACGCCATGGAGGCCATCTCGCACGCCGGAACCTGCCTCGGAATCCTCGC
CGAGGACGGCATCCTGTTGGCAGCCGAGTGCCGCAGCACAAACAAATTGC
TGGACAGCGCCATTCCTTCGGAGAAGATCTATCGCCTGAACGACAACATG
GTCTGCTCGGTGGCTGGCATCACCTCCGATGCCAATGTGCTGACCTCAGA
ACTGCGTCTGATTGCCCAGCGTTACCAGTTCAGCTACGGCGAGGTGATTC
CCTGCGAGCAGCTGGTGTCGCACCTCTGCGACATCAAACAGGCGTACACT
CAGTACGGCGGAAAGCGTCCCTTCGGCGTCTCGCTGCTCTACATGGGATG
GGACAACAAGTACGGCTACCAACTGTACCAGTCGGATCCCAGCGGCAACT
ACGGCGGATGGAAGGCCACCTGTATTGGCAACAACTTCGGTGCCGCGATC
TCCATGCTGAAGCAGGAGCTGGCCGATAAGGAGAACGTGAAGCTGACGCT
GGCGGACGCCAAGGATTTGGCCATCAAGGTACTGAGCATGACCCTGGACA
CCACCAAGCTGACCCCGGAGAAGGTCGAGATGGCCACGCTGCAGCGTGTG
GACAATAAGACCGTATACAGTGTCCTGGAGAAACCCGATGTGGAGAAGCT
GATCGAGAAGTACACAAAGGTACAGGCGGAGGCCGAGGCTGCCAAGAAGG
AGAAGCAAGCGAAGCAGCCGACCAAGGCAAGCTTTCTAGACCAT
FMO03642.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:32:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosalpha3-RA | 973 | CG9327-RA | 92..883 | 35..826 | 3960 | 100 | Plus |
| Prosalpha3T-RA | 889 | CG1736-RA | 50..526 | 50..529 | 395 | 72.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:32:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20995446..20996028 | 244..826 | 2915 | 100 | Plus |
| 2R | 25286936 | 2R | 20995102..20995308 | 37..243 | 1035 | 100 | Plus |
| 3R | 32079331 | 3R | 31122890..31123119 | 529..300 | 370 | 77.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:32:34 has no hits.
FMO03642.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:18 Download gff for
FMO03642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosalpha3-RA | 88..886 | 28..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:16:41 Download gff for
FMO03642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pros29-RA | 86..884 | 28..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:59 Download gff for
FMO03642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosalpha3-RA | 88..886 | 28..830 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:59 Download gff for
FMO03642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20995097..20995308 | 30..243 | 98 | -> | Plus |
| 2R | 20995446..20996031 | 244..830 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:18 Download gff for
FMO03642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16882602..16882813 | 30..243 | 98 | -> | Plus |
| arm_2R | 16882951..16883536 | 244..830 | 99 | | Plus |
