FMO03643.5prime Sequence
1211 bp (1075 high quality bases) assembled on 2008-08-11
> FMO03643.5prime
ACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGATGAAACT
GTTCCTGGCCTTGGCCTTTTGTGTCCTGGCGGCTAATGCCGTGGAGGTTC
GTGTGAATGGTGAGAACGGATGGTATGTGCCCCAGGCCGATGGTACCATG
GAGTGGATGGACCGCGAGTTCGCCGAGGCCTATTTGGAGACCAAGAACCG
CATGGAAGGACGCAACGTCCTGAACCCCGTCACCTTCTACCTGTACACCA
ACTCGAACCGCAACTCTCCCCAGGAGATCAAGGCTACGTCAGCATCGATC
TCTGGCTCGCACTTCAACCCCAACCACCCCACCCGCTTCACTATCCACGG
CTGGTCCTCCAGCAAGGATGAGTTCATCAACTACGGTGTCCGCGATGCCT
GGTTCACCCACGGCGACATGAACATGATTGCCGTCGACTGGGGACGTGCT
CGTTCCGTGGACTACGCCTCCTCCGTTCTGGCTGTTCCCGGAGTCGGCGA
GCAGGTGGCTACCCTGATCAACTTTATGCGCAGCAATCACGGCCTGAACC
TGGACAACACCATGGTGATTGGTCACAGCCTGGGCGCCCATGTCTCGGGC
TATGCTGGCAAGAATGTGAAGAACGGCCAGCTGCACACCATCATTGGTCT
GGACCCCGCCCTGCCCCTTTTCAGCTACGATTCCCCCAACAAGCGCCTGA
GCTCCACCGATGCTTACTACGTGGAGTCCATCCAGACCAACGGAGGAACC
CTGGGATTCCTGAAGCCCATCGGCAAGGGAGCCTTCTACCCCAACGGAGG
AAAGAGCCAGCCCGGATGTGGTGTTGATCTCACCGGATCCTGCGCCCACA
GCCGCTCAGTGATCTACTACGCCGAGTCCGTGACCGAGAACACTTCCCCA
CCATGCGCTGCGGCGACTACGAGGAGGCTGTGGCCAAGGAGTGCGGTAGC
TCCTACAGCTCCGTCCGCATGGGAGCCACCACCAATGCCTACATGGTCGC
TGGAGATACTATGTACCCGTCCGTAGCGATGCTCCTACGAATGGGCACGC
AAGCTTTCTAGACATCGTTTGGCGCCGCGGCCCAGGTAGGGGTATATCTT
AGTCTATCTAATCTATCACACTAGCTAGAAATCTGCCATGACATATGGCT
TTGATTCCACATAAAGGCCGGCAACGACGTTGACACTTTAGATGGAGTCT
CGAGATCATCT
FMO03643.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6295-RA | 1091 | CG6295-RA | 26..1037 | 40..1047 | 4960 | 99.6 | Plus |
| CG6277-RA | 1085 | CG6277-RA | 424..1022 | 421..1020 | 1030 | 78.6 | Plus |
| CG6271-RA | 1072 | CG6271-RA | 559..1013 | 565..1020 | 970 | 81.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27005967..27006922 | 1035..82 | 4680 | 99.8 | Minus |
| 3R | 32079331 | 3R | 27022156..27022732 | 999..421 | 955 | 78.4 | Minus |
| 3R | 32079331 | 3R | 27025049..27025481 | 999..565 | 910 | 81.7 | Minus |
| 3R | 32079331 | 3R | 27020332..27020935 | 999..397 | 735 | 75.2 | Minus |
| 3R | 32079331 | 3R | 27006984..27007030 | 86..40 | 220 | 97.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:33:11 has no hits.
FMO03643.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:29:49 Download gff for
FMO03643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6295-RA | 26..1043 | 40..1053 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:17:29 Download gff for
FMO03643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6295-RA | 26..1043 | 40..1053 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:21:02 Download gff for
FMO03643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6295-RA | 26..1043 | 40..1053 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:21:02 Download gff for
FMO03643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27005967..27006921 | 83..1035 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:29:49 Download gff for
FMO03643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22831689..22832643 | 83..1035 | 99 | <- | Minus |
