FMO03646.5prime Sequence
478 bp (478 high quality bases) assembled on 2008-08-11
> FMO03646.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGATGAACGAGGACA
GCAGTGCTGCCGGCGGCGGCGGGGTTAAGAAGTTCTTTCAGCGCCTCTCA
CAGACCTACCAATCCGCCTTGGACCGTAGCACACCGCACACACGAATGCG
CTGGGTGTTCGCCGGCTTTCTGCTCCTGCTCTTTGTGCTGCGCATCTTCA
TCTATCAGGGCTGGTACATCGTGTGCTATGCGCTTGGCATTTACCACTTG
AACCTGTTTATCGCTTTTTTAACGCCCAAGATCGACCCGGAGTTCGATCC
GTATTCGCAGGATGACGAGGACGAGGGACCCAATCTGCCAACTCGCAGCA
ACGAAGAGTTCCGGCCATTCATTCGCCGCCTGCCGGAGTTCAAGTTCTGG
CTGTCGGTGGCGAAGAGCACGCTCATCGGTCTGATTTGTACATTCTTCGA
TTTCTTCAACGTGCCGGTATTCTGGCCC
FMO03646.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11857-RA | 1801 | CG11857-RA | 466..910 | 34..478 | 2210 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25259491..25259868 | 101..478 | 1875 | 99.7 | Plus |
| 3R | 32079331 | 3R | 25259363..25259432 | 34..103 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:26:02 has no hits.
FMO03646.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:59 Download gff for
FMO03646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11857-RA | 462..910 | 31..478 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:17:42 Download gff for
FMO03646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11857-RA | 463..911 | 31..478 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:01 Download gff for
FMO03646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11857-RA | 462..910 | 31..478 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:01 Download gff for
FMO03646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25259359..25259432 | 31..103 | 98 | -> | Plus |
| 3R | 25259494..25259868 | 104..478 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:59 Download gff for
FMO03646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21085081..21085154 | 31..103 | 98 | -> | Plus |
| arm_3R | 21085216..21085590 | 104..478 | 99 | | Plus |
