FMO03648.5prime Sequence
972 bp (972 high quality bases) assembled on 2008-08-11
> FMO03648.5prime
GTATAGCATACATAATACGAAGTTATCAGTCGACATGCAGCGTAAATTAC
ACAAAAATATTCAGGCAACTGGACATCTGAGGCAATCTGGCATGGCGATG
CGACACTTGACAGCTGCCACAATGGGCGTATTGCTGCCAGTGGGCGTGCT
GGGATTTGTGGTGCTGATGCAATTGATGGCATCGGTGCGTGGACATGGTC
GACTAATGGATCCACCGGCCAGGAATGCCATGTGGCGTTTTGGCTATCCC
AATCCGGTGAACTACAATGACAATGAGCTCTTCTGCGGCGGCTATGCGGT
GCAATGGGAGCAAAATAAGGGACGTTGCGGTATCTGCGGCGATGCCTACC
ACGTCAAATCGCCCAGGCCGCACGAGGCTGGTGGTCAATACGCCAAGGGC
ATCATCTCACGCTACTATACCGCCGGTCAGACGATCGATGTTGAGGTGGA
ACTGACTGCCAATCATTATGGCCGTTTCGAGATGTTCCTCTGTCCGAACA
ACAATCCGCGACAGGAGGCGACACAGCAGTGCTTCGATCGTTATCCGTTG
CTCATTTCGGGCAGTCGAGAGCATCGGTATCTGATACCGCGTGATGCGAA
AAAGAAGGATATATTCCGATACAAGGTACGTTTGCCGCCATATGTCACCT
GCACACAGTGCGTACTCCAATGGACCTACTATACGGCCAATATGTGGGGC
ACCTGTGCCAATGGCACCGAAGCCGTTGGCTGCGGCAAGGCAGAGACATT
CCGCAATTGTGCGGATGTGGCGATCGTTTCGAATACCGGCGGCGGTATTC
CACCGCCTTTCGTGAATAACAAATCGCCATACTGCTCTATTATCGAGATT
ATCGTGCTCCGGCGGACAACAACATCTTTCCACTTATTGTGCGCAATGCA
ACGCGGCATGCACGCAACAGGGCAAGGCTAAGCCGCTGGCCGTGCAAGCT
TTCTAGACCATTCGTTTGGCGC
FMO03648.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42749-RB | 1407 | CG42749-RB | 225..1135 | 36..943 | 4450 | 99.5 | Plus |
| CG42749-RC | 1412 | CG42749-RC | 225..1083 | 36..893 | 4270 | 99.9 | Plus |
| CG42749-RD | 1488 | CG42749-RD | 301..1159 | 36..893 | 4270 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5301464..5302059 | 148..743 | 2980 | 100 | Plus |
| X | 23542271 | X | 5302118..5302271 | 741..893 | 720 | 99.4 | Plus |
| X | 23542271 | X | 5301319..5301404 | 63..148 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:25:40 has no hits.
FMO03648.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:49 Download gff for
FMO03648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42749-RB | 216..1138 | 28..947 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:16:40 Download gff for
FMO03648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15786-RA | 201..1123 | 28..947 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:45 Download gff for
FMO03648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42749-RB | 216..1138 | 28..947 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:45 Download gff for
FMO03648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5302121..5302271 | 744..893 | 99 | -> | Plus |
| X | 5301321..5301404 | 65..148 | 100 | -> | Plus |
| X | 5301465..5302059 | 149..743 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:49 Download gff for
FMO03648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5195354..5195437 | 65..148 | 100 | -> | Plus |
| arm_X | 5195498..5196092 | 149..743 | 100 | -> | Plus |
| arm_X | 5196154..5196304 | 744..893 | 99 | -> | Plus |
