FMO03649.5prime Sequence
732 bp (732 high quality bases) assembled on 2008-08-11
> FMO03649.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGAATCGCCTTTTT
GGTCGTGGTAAGCCCAAGGAGCCGGGTCCAAGTCTAAACGATTGCATCGC
CGGGGTCGATGCCCGAGCAACAAACATCGAAGAGAAGATCAGTAATCTGG
AGGCAGAGCTGCGCAAATACCGCGAACAAATGTCCAAGATGCGAGAAGGT
CCTGCCAAGAACTCCGTGAAACAGAAGGCCCTCCGGGTTCTCAAACAAAA
GAAGGCCTACGAACAGCAGGCAGAATCTCTGCGCAACCAGTCGTTCAACA
TGGAACAGGCCAACTATGCGGCGCAATCCTTGAAGGATACTCAGGCCACC
GTGGCGGCCATGAAGGATGGAGTCAAGCAGATGAAGACCGAGTACAAGAA
GATCAACATCGACCAGATCGAGGACATCCAAGACGACATGGCTGATATGT
TTGAGCAGGCGGACGAGGTGCAGGAGGCACTGGGCCGCACGTACGGCATG
CCTGAGGTGGATGACGACGACCTGCAGGCCGAGTTGGATGCTCTGGGCGA
TGAGATTGCCTTGGACGATGACACCAGCTATTTGGATGACGTGGTCAAGG
CTCCGGAGGCGCCGAGTCGAGAGCCGGGAGCTGACAGCATCGTCCCTGGA
AAAGAGCACCATTGAAACGGATGAGTTCGGCTTGCCCAAGATTCCGACAT
CGCTGAAGACCACAGCAAGCTTGCTAGACCAT
FMO03649.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vps60-RB | 1100 | CG6259-RB | 240..925 | 28..714 | 3380 | 99.6 | Plus |
| Vps60-RA | 980 | CG6259-RA | 120..805 | 28..714 | 3380 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17620420..17620651 | 652..421 | 1160 | 100 | Minus |
| 3L | 28110227 | 3L | 17620728..17620894 | 423..257 | 835 | 100 | Minus |
| 3L | 28110227 | 3L | 17621096..17621253 | 261..104 | 775 | 99.4 | Minus |
| 3L | 28110227 | 3L | 17621308..17621386 | 106..28 | 365 | 97.5 | Minus |
| 3L | 28110227 | 3L | 17620298..17620359 | 714..653 | 310 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:25:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 3561..3670 | 332..440 | 115 | 57.3 | Plus |
FMO03649.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:49 Download gff for
FMO03649.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6259-RA | 120..817 | 28..724 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:53 Download gff for
FMO03649.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps60-RA | 120..817 | 28..724 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:53 Download gff for
FMO03649.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17620286..17620357 | 655..724 | 94 | <- | Minus |
| 3L | 17620419..17620649 | 423..654 | 99 | <- | Minus |
| 3L | 17620729..17620894 | 257..422 | 100 | <- | Minus |
| 3L | 17621101..17621252 | 105..256 | 100 | <- | Minus |
| 3L | 17621310..17621386 | 28..104 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:49 Download gff for
FMO03649.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17613386..17613457 | 655..724 | 94 | <- | Minus |
| arm_3L | 17613519..17613749 | 423..654 | 99 | <- | Minus |
| arm_3L | 17613829..17613994 | 257..422 | 100 | <- | Minus |
| arm_3L | 17614201..17614352 | 105..256 | 100 | <- | Minus |
| arm_3L | 17614410..17614486 | 28..104 | 97 | | Minus |
