FMO03650.5prime Sequence
1247 bp (1023 high quality bases) assembled on 2008-08-11
> FMO03650.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGATCACGGAA
ACTCTCCTGACGATCTGCGCGGCGGTGTTCCTCTGCCTTTCGTATCGATA
TGCAGTGGGTCGACCCTCCGGTTTTCCACCCGGTCCTCCAAAGATTCCGC
TTTTCGGCAGCTACCTCTTCATGTTGATCATCAACTTTAAGTATCTGCAC
AAGGCGGCTCTGACCCTCAGTCGGTGGTACAAGTCGGATATCATTGGACT
GCATGTGGGTCCTTTTCCGGTGGCCGTTGTCCACAGTGCGGATGGAGTGC
GCGAGATCCTCAATAATCAGGTGTTCGATGGACGGCCGCAGCTTTTCGTG
GCCGCCATGCGCGATCCCGGCCAAGATGTGCGAGGGATCTTTTTCCAGGA
TGGCCCCCTGTGGAAGGAGCAACGTCGCTTCATCCTGCGCTACTTAAGAG
ACTTTGGTTTCGGACGACGATTCGACCAACTGGAGCTGGTCATCCAGGAG
CAGTTGAACGACATGCTGGATCTGATCCGCAACGGTCCAAAGTATCCGCA
TGAGCACGAGATGGTGAAATCCGGAGGATATCGCGTGCTTCTGCCGCTGC
TCTTTAATCCCTTCTCGGCCAACGCTCACTTTTACATTGTCTACAATGAG
TGCCTGAGTCGCGAGGAAATGGGCAAATTGGTGAAGCTCTGCCAGATGGG
CATACAGTTCCAGCGGAATGCGGACGACTACGGCAAAATGTTGAGCATTA
TACCGTGGATTCGGCACATTTGGCCCGAATGGAGTGGCTACAACAAGCTA
AACGAGTCCAACCTATTCGTGCGGCAGTTCTTTGCCGACTTTGTGGATAA
GTATTTGGACAGCTACGAAGGAGGGTGTGGAGCCGCAACTTCATGGATGT
CTACATAGCTGAACTGCGCCGAGGTTCCGGGCTACGGTTTTAATCGGGAT
CAATTGATCATGGGCCCTGGTGGGACTTCCTCCTTTCCGGGCTTCCACTG
CCATCGGAGTGCAGCTATCGCTACCTCGTTCCAGTATCTCATGCTATATT
CCGCAGTCTGCCGGCGGGTTCAGAACGGAGATCGACGAGGTGGTGGGAAT
GCGGAACGAATGGCCAACTGAGGAATCGCCAGGACCTTGCCTTTCACGGA
GGCCACATTCGCGAAGGCTGGCCATCGAACCTGTCCTCGGAGTTACCGAC
AGGCCTGGGAAGGACACGGAAATGTCGTGGGCTTACGCGCGATATAC
FMO03650.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:30:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp304a1-RA | 1716 | CG7241-RA | 33..1162 | 39..1178 | 5030 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:30:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12964518..12965223 | 383..1098 | 2945 | 97.3 | Plus |
| 3R | 32079331 | 3R | 12963977..12964230 | 132..385 | 1270 | 100 | Plus |
| 3R | 32079331 | 3R | 12963823..12963918 | 39..134 | 465 | 99 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:30:14 has no hits.
FMO03650.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:41 Download gff for
FMO03650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp304a1-RA | 27..1169 | 34..1183 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:17:43 Download gff for
FMO03650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp304a1-RA | 21..1163 | 34..1183 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:16:25 Download gff for
FMO03650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp304a1-RA | 27..1169 | 34..1183 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:16:25 Download gff for
FMO03650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12963817..12963916 | 33..132 | 96 | -> | Plus |
| 3R | 12963978..12964229 | 133..384 | 100 | -> | Plus |
| 3R | 12964520..12965310 | 385..1183 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:41 Download gff for
FMO03650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8789539..8789638 | 33..132 | 96 | -> | Plus |
| arm_3R | 8789700..8789951 | 133..384 | 100 | -> | Plus |
| arm_3R | 8790242..8791032 | 385..1183 | 95 | | Plus |
