FMO03657.5prime Sequence
901 bp (901 high quality bases) assembled on 2008-08-11
> FMO03657.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGGGCGGGATGGGGG
GCGGCGGGCTGCTGGACATCTACGCCATGGCCTGGGAGCACCTAAGACCC
GGAAGCTCGCCCGTCGACTGGTGCGAAGGCAACTACTTGATTTCGTCCAA
CATCGCCGAGTTCGTGAACACGTTTAGCAACTTCCTGTTCATCCTACTGC
CGCCCGTCCTTATAATGCTCTTCAAGGAGTACGGACGCTTTGTGACGCCC
GGAATCCACGTCATCTGGGTGCTGCTCATCGTGGTTGGCCTGAGTTCGAT
GTACTTCCATGCCACTTTGAGTCTGATTGGCCAGCTGCTGGACGAACTGG
CCATACTCTGGGTCTTCATGGCGGCCTTTTCGCTCTTCTATCCGAAGCGA
TACTATCCCAAGTTCGTGAAAAACGATCGCAAAACCTTCAGTTGGCTCAT
GCTCTTGTCGGCGATTGCTGCGACGGGCTTGTCGTGGTGGAAGCCCATTG
TTAACGCCTTTGTTCTCATGTTCATGAGTGTGCCGACCATGGTAATGCTC
TACACAGAGCTGCAGAGAGTTAGTGACCAGAGGGTCTACCGCCTGGGCAT
CCGATCGACGACCGTCTGGGCTGTTGCGGTGTTCTGCTGGATCAATGACC
GGATCTTCTGCGAGGCCTGGTCCTCGATCAATTTTCCATACCTGCACGGC
TTCTGGCACATATTCATTTTTATAGCCGCCTACACGGTGCTGGTGCTTTT
CGCCTACTTCTACGTGGAATCGGAGCTGCCCCAGCGACAGCCGCTGCTGA
AGTACTGGCCAAAGAACGAGTTCGAGTTCGGGATACCCTTCATTTCGATC
CGGAATCCAGGTAAAGCTCTGCGCAACACCATCGCAAGCTTTCTAGACCA
T
FMO03657.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bwa-RA | 2269 | CG13969-RA | 371..1219 | 35..883 | 4230 | 99.9 | Plus |
| bwa-RB | 1538 | CG13969-RB | 371..1196 | 35..860 | 4130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20072352..20072669 | 566..883 | 1575 | 99.7 | Plus |
| 2L | 23513712 | 2L | 20069047..20069304 | 172..429 | 1290 | 100 | Plus |
| 2L | 23513712 | 2L | 20069376..20069514 | 429..567 | 695 | 100 | Plus |
| 2L | 23513712 | 2L | 20066761..20066898 | 35..172 | 690 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:08:31 has no hits.
FMO03657.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:03:57 Download gff for
FMO03657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bwa-RA | 369..1223 | 32..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:18:16 Download gff for
FMO03657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bwa-RA | 390..1244 | 32..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:20 Download gff for
FMO03657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bwa-RA | 369..1223 | 32..888 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:20 Download gff for
FMO03657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20066759..20066898 | 32..172 | 99 | -> | Plus |
| 2L | 20069048..20069304 | 173..429 | 100 | -> | Plus |
| 2L | 20069377..20069514 | 430..567 | 100 | -> | Plus |
| 2L | 20072354..20072673 | 568..888 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:03:57 Download gff for
FMO03657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20066759..20066898 | 32..172 | 99 | -> | Plus |
| arm_2L | 20069048..20069304 | 173..429 | 100 | -> | Plus |
| arm_2L | 20069377..20069514 | 430..567 | 100 | -> | Plus |
| arm_2L | 20072354..20072673 | 568..888 | 99 | | Plus |
