FMO03658.5prime Sequence
700 bp (700 high quality bases) assembled on 2008-08-11
> FMO03658.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTTCCCGCATT
TGTTTTGTTTGTTTATAGCAATTATGGATCCTTCAATTATTGAATTTATT
GGCGAAAAATGCATGATCAGCATAATACCGAACTTCAGCAACGAGCCTCT
GCACCTGATATACGGACCTGTGGGCCCTTTCCGAGCCGGTTTTCCCGTCT
TCGTGCCCCTGTGGATGGCCACGCATCTGCGCAAGCAACAAAAGTGCCGA
ATTGTACCTCCAGAATGGATGGACATGGATATATTGGAGGAAATCAAGGA
GGAGGAAAAGCGCTCAAAGTTCTTTACCAAAATGCCCTGTGAGCATTACA
TGGTAGTGGCCCAGTTGGTCATGAGCACGGCTCCGGATGACGTTCCGCGT
TGCGAGGAGCTGCGCACTGTGATCAAGGACATCTTCGACATACGCGAGTC
CAAGCTGCGCACTTCGATCGACGCCTTTATCAAGGGAGAGGGCACATATG
CAAAGCTAGACAACCTCACGCTTCTGGAGATCCACAGCGTGAGACCCATT
CTGCCCTATTCCCTGGACCACATAGCACGGTACCAGCGCACGGCCACTGC
GTCTCAAAGGGACACCTCCATGCTAAGTGCATCCATGGCAGGCTCCAGTT
CGGGTCCGAACAGTAACTCTCTGTTTTCTCAGGCAAGCTTTCTAGACCAT
FMO03658.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Psf2-RB | 831 | CG18013-RB | 27..671 | 38..682 | 3225 | 100 | Plus |
| Psf2-RC | 811 | CG18013-RC | 37..651 | 68..682 | 3075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4386342..4386705 | 682..319 | 1820 | 100 | Minus |
| 2L | 23513712 | 2L | 4386762..4387044 | 320..38 | 1415 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:32:12 has no hits.
FMO03658.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:52:00 Download gff for
FMO03658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psf2-RB | 24..671 | 34..682 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:16:02 Download gff for
FMO03658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psf2-RA | 3..647 | 38..682 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:09:49 Download gff for
FMO03658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psf2-RB | 24..671 | 34..682 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:09:49 Download gff for
FMO03658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4386342..4386705 | 319..682 | 100 | <- | Minus |
| 2L | 4386764..4387053 | 24..318 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:52:00 Download gff for
FMO03658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4386342..4386705 | 319..682 | 100 | <- | Minus |
| arm_2L | 4386764..4387053 | 24..318 | 97 | <- | Minus |
