Clone FMO03660 Report

Search the DGRC for FMO03660

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:36
Well:60
Vector:pMK33-CFH-BD
Associated Gene/TranscriptObp83g-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO03660.5prime Sequence

494 bp (494 high quality bases) assembled on 2008-08-11

> FMO03660.5prime
CTTCGTATAGCATACATAAAACGAAGTTATCAGTCGACATGCAGTCCCAA
TCCCTCCTGCTGATCGTTGCAGCCGTTGCCACGTTTCTGGTGGCCCAGAC
TACGGCCAAGTTCCTGCTGAAGGACCACGCCGACGCAGAGAAGGCGTTCG
AGGAGTGCCGTGAGGACTACTACGTGCCGGACGACATCTACGAGAAGTAC
CTGAACTACGAGTTTCCCGCCCACCGGCGCACCAGCTGCTTCGTCAAGTG
CTTCCTGGAGAAGCTTGAGCTGTTCTCGGAGAAGAAGGGATTTGACGAGC
GCGCCATGATCGCCCAGTTCACCTCCAAGAGCAGCAAAGACCTGTCCACG
GTCCAGCACGGCCTGGAGAAGTGCATCGACCACAACGAGGCCGAGTCGGA
TGTCTGCACCTGGGCCAACCGAGTCTTCTCCTGCTGGCTGCCCATCAACC
GCCACGTGGTGCGTAAGGTCTTCGCCGCAAGCTTTCTAGACCAT

FMO03660.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:25
Subject Length Description Subject Range Query Range Score Percent Strand
Obp83g-RA 569 CG31558-RA 57..494 39..476 2190 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6111746..6112126 476..96 1905 100 Minus
3R 32079331 3R 6112187..6112246 98..39 300 100 Minus
Blast to na_te.dros performed on 2014-11-28 20:08:24 has no hits.

FMO03660.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:03:53 Download gff for FMO03660.5prime
Subject Subject Range Query Range Percent Splice Strand
Obp83g-RA 49..500 32..483 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:17:39 Download gff for FMO03660.5prime
Subject Subject Range Query Range Percent Splice Strand
Obp83g-RA 44..495 32..483 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:15 Download gff for FMO03660.5prime
Subject Subject Range Query Range Percent Splice Strand
Obp83g-RA 49..500 32..483 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:15 Download gff for FMO03660.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 6111740..6112123 99..483 98 <- Minus
3R 6112187..6112254 32..98 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:03:53 Download gff for FMO03660.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1937462..1937845 99..483 98 <- Minus
arm_3R 1937909..1937976 32..98 95   Minus