FMO03661.5prime Sequence
862 bp (862 high quality bases) assembled on 2008-08-11
> FMO03661.5prime
AGCATACCTTATACGAAGTTATCAGTCGACATGAAGCTCTTTGTTTTCCT
AGCCTGTCTGGCTGTCGCCTCTGCCGGAGTGGTGCCCTCCGAGTCCGCCA
GGGCTGTCCCAGTGAAGGACATGCCACGCGCCGGCAAGATCGAGGGTCGC
ATTACCAATGGATACCCGGCCTACGAGGGCAAGATTCCCTACATTGTCGG
ACTGAGCTTCAACGATGGCGGCTACTGGTGCGGGGGTTCCATCATCGACC
ACACCTGGGTCCTGACCGCAGCCCACTGCACGAACAGCGCTAACCATGTG
CTCATCTACTTCGGAGCCAGCTTCCGTCACGAGGCCCAGTACACCCACTG
GGTGAGCCGCAGCGACATGATCCAACATCCCGACTGGAACGACTTCCTGA
ACAACGACATCGCTCTGATCCGCATCCCCCACGTGGACTTCTGGAGCTTG
GTCAACAAGGTGGAGTTGCCCAGCTACAACGATCGCTACAACAGCTACTC
CGGCTGGTGGGCAGTGGCCTCTGGATGGGGTCTGACAGACAACAACAGCG
GCATGTCCAACTACCTGAACTGCGTCGATGTCCAGATTATTGACAACAAC
GACTGCCGCAACTACTACGGTAGCAACTACATCACCGACAACACCATCTG
CATCAACACCGACGGCGGCAAGTCCTCCTGCAGCGGTGACTCCGGTGGTC
CCTTGGTCCTGCACGATAACAACCGCATCGTGGGCATCGTATCCTTCGGC
AGCGGAGAGGGCTGTACCGCCGGCCGCCCCGCCGGATTCACTCGTGTCAC
CGGATACCTGGACTGGATCCGCGACCACACCGGCATTTGTCTACGCAAGC
TTTCTAGACCAT
FMO03661.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:41:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Jon44E-RB | 1397 | CG8579-RB | 20..834 | 29..844 | 4055 | 99.9 | Plus |
| Jon44E-RA | 900 | CG8579-RA | 20..834 | 29..844 | 4055 | 99.9 | Plus |
| Jon99Cii-RA | 862 | CG31034-RA | 126..816 | 143..836 | 785 | 75.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:41:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8691467..8692275 | 29..837 | 4045 | 100 | Plus |
| 3R | 32079331 | 3R | 29924097..29924490 | 530..143 | 670 | 79.2 | Minus |
| 3R | 32079331 | 3R | 29922339..29922732 | 143..530 | 640 | 78.7 | Plus |
| 3R | 32079331 | 3R | 30487407..30487808 | 530..135 | 605 | 77.9 | Minus |
| 3R | 32079331 | 3R | 30489083..30489484 | 135..530 | 605 | 77.9 | Plus |
| 2L | 23513712 | 2L | 4954627..4955031 | 536..135 | 520 | 75.8 | Minus |
| 3R | 32079331 | 3R | 29922829..29923029 | 636..836 | 255 | 75.1 | Plus |
| 3R | 32079331 | 3R | 29923800..29924000 | 836..636 | 255 | 75.1 | Minus |
| 3R | 32079331 | 3R | 30487110..30487310 | 836..636 | 255 | 75.1 | Minus |
| 3R | 32079331 | 3R | 30489581..30489652 | 636..707 | 225 | 87.5 | Plus |
Blast to na_te.dros performed 2014-11-28 22:41:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2799..2996 | 471..671 | 168 | 56.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2535 | 471..684 | 163 | 55.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2339..2464 | 539..670 | 160 | 60.6 | Plus |
FMO03661.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:24 Download gff for
FMO03661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jon44E-RA | 20..838 | 29..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:18:16 Download gff for
FMO03661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jon44E-RA | 18..836 | 29..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:22:31 Download gff for
FMO03661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jon44E-RA | 20..838 | 29..849 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:22:31 Download gff for
FMO03661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8691467..8692280 | 29..843 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:24 Download gff for
FMO03661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4578972..4579785 | 29..843 | 99 | <- | Plus |
