FMO03662.5prime Sequence
1232 bp (910 high quality bases) assembled on 2008-08-11
> FMO03662.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCCATGTCG
TTGGGCTCCAAGATCCGGAAATTGGTCACCAGCAGACGGCACTTCCTGCT
TTTGCGCCGATCGCTGAACCAAGATCTGACAACGGCGCTGAGACCCTTCT
ACTTCGCGGTGCATCCTGACTTCTTTGCCCAGCATCCGGAGCAGAGGAAC
ACCAACGAGAACTCACTGAAATTGCTGAGTGAGCATCTAGAGGCTTTGTA
TGAACGCAGACAGCGAAGCGGGGACACCCAAGTGCTCAAGTTCTATGTAC
GCACCAGTTCAGATGCTGACAAGCGAGACTCCTTCAAGCTCATCCAAATA
CGCACGGACTGGCAGAGTACCCGAGATCCCAAAACCTTTATTCAAGGTCT
TCTGGAGTCATGCAACTTGTCCACGGAGTATGTGAAGAACATTAAGGCCC
AGCCTGAGCCGCCAAAAACCTCTGGCTTGGATTTTAAACCAAGCCATGAC
TATCACTATGACATGGAGTTCGCCGAGTTTGAAACTCATTTGAAGAATGA
ACGTGCCAGTAAGCGTCCAGTGCTGACCACCTGGCTGGAAGAGAATGCTG
GCACAGCCAAACAGCGCTCTAAGGAAACTGCGGATCTGCAGGCCGAAATC
GACAAACTGAAAAAAAATGCTGGTAGAGAAACTGGAGTTGCAAGATGCTC
GTTACGAGTGCGGCTGGAACATTGAGCACTACCGTGGCTGTTTAAAGACC
CTTGAGCGACTATCCAACACCCATTTGTTGGAAATGGCTTCCCTGAAAGG
TCGCATAGTGGTTTTTGCTCCCTTTACCGGCATCAATTAAAAGGCCATGT
GATGCTTTTTACTGGTGATGTTCTCAGCACATGGATTGACTTCATCAAGA
ACATTCCGCACTACGATGCCTATTTAAAGGTGGTGCCCGTGTATGAACGA
ACACTGATCTCATGGTTCTACTGAATCATCCAGATAGGTCGTCGCAAGTT
TATGCCCTAACAACAAGGCAAGTGGCTATGCAGGCTAGCTCATGAAGGTC
ACACTTCCGTCAGCGATTACTTGGCAAACAAAATATCCGCGGAATGGCCG
AAAACGCTGAAAGGCTGACAATCGGGGGATCGAGGTCGGTCTTGATGTAG
GCCTTACGGGACAGTTACCCACCAGTCACGTTCGGGATGCTATATCTCCT
GAACTTCTACGGGTGATACTGTAACTGGCGCC
FMO03662.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13295-RA | 1638 | CG13295-RA | 129..1203 | 39..1113 | 4985 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6073925..6074489 | 1113..549 | 2200 | 96.5 | Minus |
| 3L | 28110227 | 3L | 6074547..6074974 | 549..122 | 2125 | 99.8 | Minus |
| 3L | 28110227 | 3L | 6075033..6075117 | 123..39 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:36:35 has no hits.
FMO03662.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:42 Download gff for
FMO03662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13295-RA | 125..1213 | 31..1122 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:16:54 Download gff for
FMO03662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13295-RA | 120..1208 | 31..1122 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:03 Download gff for
FMO03662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13295-RA | 125..1213 | 31..1122 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:03 Download gff for
FMO03662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6073915..6074489 | 549..1122 | 95 | <- | Minus |
| 3L | 6074548..6074972 | 124..548 | 99 | <- | Minus |
| 3L | 6075033..6075121 | 31..123 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:42 Download gff for
FMO03662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6067015..6067589 | 549..1122 | 95 | <- | Minus |
| arm_3L | 6067648..6068072 | 124..548 | 99 | <- | Minus |
| arm_3L | 6068133..6068221 | 31..123 | 95 | | Minus |
