FMO03668.5prime Sequence
549 bp (549 high quality bases) assembled on 2008-08-11
> FMO03668.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCCTCCCAAATT
CGACCCAACGGAAGTTAAATTGGTGTACCTGCGTTGCGTGGGCGGAGAAG
TCGGTGCCACATCCTCCCTGGCCCCAAAGATCGGTCCCCTCGGTCTGTCG
CCCAAGAAAATCGGTGATGACATCGCCAAGGCCACCTCCGACTGGAAGGG
TCTGAAGATCACCGTCTGCCTGACCATCCAGAACCGACAGGCCGCCATCT
CCGTGGTTCCCTCCGCCGCCTCGCTGATCATCAAGGCTCTGAAGGAACCC
CCACGTGACCGCAAGAAGCAGAAGAACATCAAGCACAGTGGAAACATTGG
CTTCGAAGACATTCTGGCCATCGCCCGCGTGATGAGGCCCAGGTCCATGG
CCCGTGAGTTGAAGGGAACCTGCAAGGAAGTTCTGGGAACCGCCCAGAGC
GTCGGCTGCACCGTTGACGGAAAGCACCCTCACGATGTTATTGACGAACT
GAACGAGGGCTCCATTGAAGTCCCCGCGGAAGCAAGCTTTCTAGACCAT
FMO03668.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:51:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL12-RC | 1095 | CG3195-RC | 93..587 | 37..531 | 2475 | 100 | Plus |
| RpL12-RB | 640 | CG3195-RB | 85..579 | 37..531 | 2475 | 100 | Plus |
| RpL12-RA | 648 | CG3195-RA | 93..587 | 37..531 | 2475 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:51:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24061150..24061352 | 329..531 | 1015 | 100 | Plus |
| 2R | 25286936 | 2R | 24060812..24060993 | 147..328 | 910 | 100 | Plus |
| 2R | 25286936 | 2R | 24060675..24060749 | 73..147 | 375 | 100 | Plus |
| 2R | 25286936 | 2R | 24060538..24060574 | 37..73 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:51:15 has no hits.
FMO03668.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:38 Download gff for
FMO03668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL12-RA | 89..590 | 33..535 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:18:07 Download gff for
FMO03668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL12-RA | 67..568 | 33..535 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:01 Download gff for
FMO03668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL12-RA | 89..590 | 33..535 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:01 Download gff for
FMO03668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24061150..24061355 | 329..535 | 99 | | Plus |
| 2R | 24060676..24060749 | 74..147 | 100 | -> | Plus |
| 2R | 24060813..24060993 | 148..328 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:38 Download gff for
FMO03668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19948673..19948878 | 329..535 | 99 | | Plus |
| arm_2R | 19948199..19948272 | 74..147 | 100 | -> | Plus |
| arm_2R | 19948336..19948516 | 148..328 | 100 | -> | Plus |
