FMO03669.5prime Sequence
1232 bp (1076 high quality bases) assembled on 2008-08-11
> FMO03669.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGGACAGTCGAGCG
GCAGCAGAACCCATTCCCCATGTGAGCCCGAGTCCATTTCCGAATCCGAG
TGCGGTCAACCAAACCCTCGAGGAGCGCCTGGGATTGGATCTAGTACAAG
TCTACGACTGGGACTGGTGGGGAACCCTGGTCCAGAGCGGCGAATCCCTC
CTGCTAATCCTGTCCACCTTGTGGTGCATTTTGCTCGCTCGAGTGGTTTG
CCAAAAGCTGAGGCTTCATGGCTCTGCCGACCTCTGCTATGCCACGGAGT
TCCTCCTGGTCATCCTGCCCTGCATTCTGCTCGTCTCCGTGGCCGTGGAC
TACAGTGGCTACATAGGACTGCTAATGCTCGTGGCCACCTTGTGGTTTCT
GCGCACGAGCAGGGCTCTGGAACGGGCTCGCACCCGCGTTCAGTTCGACT
TGGGCGGCAATAGGCCCATGTGCTTGTCCATCCTCCGTGCGCTGACCCAC
TTGATCACCGCCGTCTGCATTCTGGCCATCGACTTTGGCAGTTTCTATAG
GCCATACCGCAAGAGCAGGCAGTTCGGAGCCAAGCTCATGGACACCGGCA
TCGGTCTGTTTGTTTTCACCATGGCCATGGTGTCGCGGAGAACGCGTCAC
TGGTCAGATCTCCGCCGGAGTGTGATCTACTCTGCCCTGCCGCTCATCCT
GCTGGGACTGGCGCGCACGGTGTCAATTTTGACTCTGAGTTACGGGCAGG
ATGCCCATGAGTACGGCCAGCATCTGAATGCCTTCTTTACCCTGGGCTTC
ACCAAGTTCCTGGGCTCTCTGGTCAGCATTCTGGCCCGCAAAGGATCTCC
ATTTGCTGCCATTGGGATTCGGTTTGTTGGTGATCCACCAGTTTGGCCTG
AGTGTCCTGGGCATCTCCGACTATGTGATGAACGAGGATGTGGAGCGCTC
GAGTTTCTTAATGCAAATCGCGAAGGTCTGGTTTCTTGCAGAATCGTTGG
ACTGTTCCTGCTGTTCATTTACGTCAACCGTTGGATGGTGCGAAAGTCTG
CTCACTACTCGAGTTGTCAGAAGCTGAGGCGTCTGTTCTTTCTGTGCCTA
TATCTGTGGAACTCGTTCGTCAATCAAGGCTACGAATTGAATCTCCGGGG
AACTGCCATCTGGGGCCATGCAATGAATCTGCATAGGGAAACCACTTGTG
GCAATCCGGTACATAACATTGTGCATACTAAA
FMO03669.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18173-RB | 2200 | CG18173-RB | 300..1449 | 28..1164 | 5110 | 97.3 | Plus |
| CG18173-RA | 1916 | CG18173-RA | 16..1165 | 28..1164 | 5110 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1736963..1737807 | 873..28 | 4165 | 99.8 | Minus |
| 3L | 28110227 | 3L | 1736650..1736911 | 1122..871 | 670 | 90.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:35:33 has no hits.
FMO03669.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:22 Download gff for
FMO03669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18173-RA | 16..1137 | 28..1139 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:16:56 Download gff for
FMO03669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18173-RA | 1..1121 | 29..1139 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:15 Download gff for
FMO03669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18173-RA | 16..1137 | 28..1139 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:15 Download gff for
FMO03669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1736662..1736910 | 872..1110 | 93 | <- | Minus |
| 3L | 1736965..1737807 | 28..871 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:22 Download gff for
FMO03669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1736662..1736910 | 872..1110 | 93 | <- | Minus |
| arm_3L | 1736965..1737807 | 28..871 | 99 | | Minus |
