FMO03671.5prime Sequence
914 bp (279 high quality bases) assembled on 2008-08-11
> FMO03671.5prime
TATAGCATACATTATACGAAGTTATCAGTCGACATGGCCACGACGGCGGC
GGGGATCCAACAGCAGCAGGTGATTGGCCTGGGAGCGGCATACGATCGAC
AGCAAAGCACCGATTCCGGCTGGGACAATCCCTTTCGACCAGGCGGCGAT
CTGTCCAGAGAGGCTGATGAAATTGTCAATATGATCAGAGGTGGCAAGCC
CATCACACCCACAGAGGAGCGTACAATTGGCAACGGGAGCGCCCCAGCAT
GCGGGACGAAAAATTGCAACGGCGGTACGGCGATTCGGCGAAAAGTGTAA
TCCAAATCCAATCTCTCCCCAAAAACCTAGCAACAGCACAAAAATGGGAA
CAAAATTCCCCATGCCCTCTGGCAACTGCCCAACCCCTGGGCCCCGGAAA
AACCACCCACCGGGGACCCAAACCTGAACGGGGGGAACCGGGGAAAAATG
GGGGGCCCCCCCCCCTGGGGACCGGGGGGCCCAAAACGGGGGGGTTCCCC
GGAACCAAACTCCCCCTTAATCCTTGGGGGCCCCCCCCCGGAAAAAAAAA
CAAAAAAAGGGGGGGGGGGGGTTCTCTTTAAAAAAAATTTTTTAAAAAAC
ATTTTTTTTGGGGCCCCCGGGGCCCCCGGAAGGGGGGCTAAAAATTTAAT
TTAATATTTTAAATATATAAACCCAACACCCCCCAGAAAAAAACCCTCGC
GCACAACAAATGTGGTTTGTTTTCCCCCACAAAAAAAAACACCCCCGCGG
GCGACACAGCGTTTTTAAAAAAAACCAGAAGTGGTTTCTAGAGGTTTTTG
TGTGTTATTCTCACAGGATGTACTCCGCCGCATCTCTACTCATATATTTC
TCGCCTCGCGCCGCGCGCTCCTAGCTGATGTGTGTGTTGTATATATTTAT
CTCTGCCTCAGCCA
FMO03671.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42258-RF | 2740 | CG42258-RF | 373..705 | 34..380 | 1290 | 93.9 | Plus |
| CG42258-RD | 1806 | CG42258-RD | 373..705 | 34..380 | 1290 | 93.9 | Plus |
| CG42258-RC | 3827 | CG42258-RC | 1460..1792 | 34..380 | 1290 | 93.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12475913..12475999 | 106..192 | 435 | 100 | Plus |
| X | 23542271 | X | 12475767..12475840 | 34..107 | 370 | 100 | Plus |
| X | 23542271 | X | 12476151..12476243 | 189..284 | 315 | 95.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:25:58 has no hits.
FMO03671.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:54 Download gff for
FMO03671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42258-RC | 1460..1761 | 34..343 | 95 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:18:06 Download gff for
FMO03671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42258-RC | 889..1190 | 34..343 | 95 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:57 Download gff for
FMO03671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42258-RC | 1460..1761 | 34..343 | 95 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:57 Download gff for
FMO03671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12476153..12476268 | 191..312 | 92 | -> | Plus |
| X | 12475767..12475840 | 34..107 | 100 | -> | Plus |
| X | 12475915..12475997 | 108..190 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:54 Download gff for
FMO03671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12369800..12369873 | 34..107 | 100 | -> | Plus |
| arm_X | 12369948..12370030 | 108..190 | 100 | -> | Plus |
| arm_X | 12370186..12370301 | 191..312 | 92 | -> | Plus |
