FMO03674.5prime Sequence
1220 bp (1046 high quality bases) assembled on 2008-08-11
> FMO03674.5prime
GTATAGCATACCTTATACGAAGTTATCAGTCGACATGCCTAGCGGTGTTT
TTCAAAAACGGCCAAAAGCAGCCGAAACTATTTCGCTGTTCTGCATGATC
TTAATAAGGCTGAGCCGTGCCGCGGATGACAGCCATGAGACGAGCACTTT
GTTAGCCACCATCACTACCATAACCACCGAGATCATTCCGATGCCCGATT
CTGGGCGCAGCTGCTTCGGTTGGTCCTCCGCGCCGGAGGCAGCGGGCGGC
AACTGCTCCAGATCGAACCGGAATGGAACACTTAAGTGCTATGGCGGAAT
GAATAACCTGGCTGCGCTGAACCAATCTGGAAAGTTGAGTAGAGTCCAGC
CCGCACTGGAAATGCTTCTGTGCGGCTGGCCAAAGGATGGTCTAAATCAT
TTCAGGGATCTTCAGAAATTGCCTCGCCTTCGATCACTGACCATCGAGTA
CAGTGGCTTCACCGAATTCAAATTCGACTTTCCCGAAATGTTGGAGCTAC
ATACTATCAACATTTCGTGGACGAATCTCTCGTACATCTCATCGCGAACC
TTCAAACGTGTGCATCCGCTCAAGGTCTTAGATCTGCGATGGAACCAGCT
CATTCAACTGGATGGACCACTGTTGCTGCCCCGCAATTTCGAGCAACTCT
ATCTGGCGGGCAATCCGTGGAACTGTACGCGCAACTTCAAGTGGTTGCTG
CTGCAGCCGGAAAAGGGACGCCTGGTGGTGGATCGCGACGAACTAATATG
CACAGATCGAAAGTATAAGGAACGCCAGATGCTCATGGTCATGCACTACA
AACTGGAGCTGAAGAGACAATGCCAATCGCATGAGGATCTAAGGAACTGC
ACTTGCCTAATGCATCACATCTTACCCAAGACTCACATACCGCTCTATAC
GGTCAACTGTTCCCATTTGCAGTTCCATCGCTTGCCTGACTTTTTGCCGG
AAAACACCACCCACTTTAGTTATAAACGATAATATGATCAGTGACATAAA
TCCGCTGCGGGACAATCCCACTACCGCACGTTGTGATATGCAGCTGGAAA
ACATCAGATATTCCATGTGACAACTTGAGGAACCTTACTGCTGCAGACTC
GCTTGCCATCTGCGTGCACAATCTGGCCAAGCTTCAGTCTACGCCCTTGA
CACGCCTTGATGACACCGGAATGTCAAATCCGCAATGGCTAAGCCGAATC
CTCCCTGTGCAACTCTGCTA
FMO03674.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:58:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| swi2-RA | 2582 | CG14485-RA | 270..1449 | 35..1198 | 5180 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:58:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17691942..17692426 | 806..322 | 2425 | 100 | Minus |
| 2R | 25286936 | 2R | 17692579..17692793 | 321..107 | 1075 | 100 | Minus |
| 2R | 25286936 | 2R | 17691704..17691884 | 986..805 | 845 | 98.9 | Minus |
| 2R | 25286936 | 2R | 17695010..17695084 | 109..35 | 375 | 100 | Minus |
| 2R | 25286936 | 2R | 17691550..17691637 | 1069..986 | 195 | 92 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:58:42 has no hits.
FMO03674.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:11:24 Download gff for
FMO03674.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| swi2-RA | 270..1321 | 35..1081 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:17:44 Download gff for
FMO03674.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| swi2-RA | 268..1319 | 35..1081 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:46:05 Download gff for
FMO03674.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| swi2-RA | 270..1321 | 35..1081 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:46:05 Download gff for
FMO03674.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17691704..17691883 | 806..986 | 98 | <- | Minus |
| 2R | 17691560..17691636 | 987..1059 | 93 | <- | Minus |
| 2R | 17691943..17692426 | 322..805 | 100 | <- | Minus |
| 2R | 17692579..17692791 | 109..321 | 100 | <- | Minus |
| 2R | 17695011..17695084 | 35..108 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:11:24 Download gff for
FMO03674.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13579065..13579141 | 987..1059 | 93 | <- | Minus |
| arm_2R | 13579209..13579388 | 806..986 | 98 | <- | Minus |
| arm_2R | 13579448..13579931 | 322..805 | 100 | <- | Minus |
| arm_2R | 13580084..13580296 | 109..321 | 100 | <- | Minus |
| arm_2R | 13582516..13582589 | 35..108 | 100 | | Minus |
