FMO03676.5prime Sequence
958 bp (958 high quality bases) assembled on 2008-08-11
> FMO03676.5prime
AGCATACATTATACGAAGTTATCAGTCGACATGGTGAATGACTCTGGTCT
ATCGACAGTGGACGACTTGGAGCAAAAACTGAATTCGGCCAAGCAGTCGC
TGGTGATCCTAAATGAAAACATTCGCCGCATTGCTGGTCGCGTCCCCAAG
GAATCCCTGCAGAGATCGGAAAAATTCAAATACACCCAAGATGGCAAGAA
GAACGAGCACAATGGGGACCGACCGTTCCCCCGAAATGCAACACCCGGTG
GGGTCTTCAAAGACAAGCGGCGAATGTACGAAAGCAAGAATCCAATTTCC
CGTTTCCCAATCGAAGAAAACGAGGGTCGTCCGCCACGGATTAACTCGCG
GGTCATCCGGGAGATGCCAACTAAAAAGGAGATTGTCGAGGCACAGGGCA
CAGACTCTGAGTCGAGGGCCAGGAATCGCAGGATGTTCGGATCGCTGTTG
GGAACCCTACAGAAGTTCTGTCAGGAGGAATCGCGACTGAAGAGCAAGGA
GGATAAAAAGGCTGAGATCGATAGGAAGGTGGAAAAGCAGGAACTGCAGG
AAAGAGCGATGCTGAGGAAACAGCGTGAAACACTATTCTTAGATAGGAAA
AAAAAGCAATTCGAGATCCGTAGATTAGAGTACAAAATGGCCAGAATGAA
GGACTTCAAGGTCTGGGAAGCAACTATGTTGAATGCGAAAAATAACATCC
GAACAAAAACGAAACCACATCTGTTCTTTAGGCCAAAAGTGCATTCGCCT
AGAACGGAAAAATTGTTGAGCAAAAGCAAAAGTGAAGCTGATGTGTTTAT
AGAATTCCGGCGCGAAGAATTGGAAGTTGAGCTTAAAAACTTGGAGAACA
TGAACTTTGGGGAAGATGGAAGACGATACTGCAATAGACGAAAGTTTCTT
TGAAGAGCCTGACGACGAAGAGCAGTTGGATAAGTGTAAGGCAAGCTTTC
TAGACCAT
FMO03676.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:13:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pnn-RA | 1202 | CG8383-RA | 111..1019 | 31..940 | 4510 | 99.8 | Plus |
| Pnn-RB | 1659 | CG8383-RB | 111..1014 | 31..935 | 4485 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:13:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9741197..9741973 | 163..940 | 3825 | 99.7 | Plus |
| 3R | 32079331 | 3R | 9741009..9741142 | 31..164 | 670 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:13:53 has no hits.
FMO03676.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:13 Download gff for
FMO03676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pnn-RA | 111..1029 | 31..953 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:16:00 Download gff for
FMO03676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pnn-RA | 88..1006 | 31..953 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:51:46 Download gff for
FMO03676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pnn-RA | 111..1029 | 31..953 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:51:46 Download gff for
FMO03676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9741009..9741142 | 31..164 | 100 | -> | Plus |
| 3R | 9741199..9741983 | 165..953 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:13 Download gff for
FMO03676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5566731..5566864 | 31..164 | 100 | -> | Plus |
| arm_3R | 5566921..5567705 | 165..953 | 99 | | Plus |
