FMO03680.5prime Sequence
1207 bp (1026 high quality bases) assembled on 2008-08-11
> FMO03680.5prime
TATAGCATACATTATACGAAGTTATCAGTCGACATGTCTGTGTGGACCAC
GGCCAACAATTCGGGCCTAGAGACGCCAACAAAGTCGCCGATCACGTCGT
CGGTTCCGCGGGCAGCGAGAAGTTCTGCAGTGATCACCACTGGAAATCAC
CAGCAGCACCACTTCCAGCACGTTGTGGCCGCCGCCGTTGCAGCCGCCAC
TTCAGTGGCCACCGGTCATCAGTTCCAGCAACAGTTCCCGCTGCACGCAC
ATCCGCATCCACAGCACCACAGCAACAGTCCCACGGGTAGCGGCAGCAAC
AGCAACAACAGCGCAGGTTTCCAGCGCACCAGCATCAGCAACTCGCTGCT
GCAGTTCCCGCCGCCCCCGCCCCCTTCCTCACAGAACCAGGCGAAGCCGC
GCGGACACCATCGCACCGCCAGCAGCAGCATGTCGCAGTCCGGCGAGGAT
CTCCACTCGCCCACCTACCTGTCCTGGCGGAAGCTCCAGCTTAGTCGGGC
CAAGCTAAAGGCATCCAGCAAGACGTCCGCCCTGCTCTCCGGATTCGCCA
TGGTGGCGATGGTGGAGGTGCAACTGGATCACGATACGAATGTACCACCG
GGCATGCTGATAGCCTTCGCCATCTGCACCACCCTCCTGGTGGCGGTGCA
CATGCTGGCCCTGATGATCAGCACCTGTATCCTGCCAAAATATTGAGACG
GTGTGTAATTTGCATAGTATTTCCCTGGTCCACGAATCGCCACACGAGCG
TCTCCATTGGTACATTGAAACGGCGTGGGCATTCTCCACGCTGCTGGGAC
TCATACTCTTTCTACTGGAGATAGCCATCCTGTGCTGGGTGAAATTCTAT
GACCTAAGTCCGCCGGCGGCTTGGTCAGCGTGTGTGGTCCTCATACCGGT
GATGATCATCTTTATGGCCTTCGCCATTCACTTCTATTCGCTCCCTGAGT
CGCACAAATTATGAGGTGACAGTCTTCGGGCATCGTGAGCTGGAGATGCT
CAAGGAGCAGATGAAGCAGATCATTTGAGCATCACAATAACATACGAAAT
ATTGGCATGACTTATGGCGCATCGGGTACATTGTCGCAAGCTTTCTAGAC
ATTCGTTGGCCGCGGACAAGTATGTCATTATCGAATCTTATCTTATCTTA
ATCAACATAGCCTAAGGAAATCTGGGTCATGAGACTAATGTGCTTTGGTC
AATTCAT
FMO03680.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:15:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| olf186-F-RF | 2407 | CG11430-RF | 563..1616 | 33..1085 | 4975 | 98.6 | Plus |
| olf186-F-RA | 2080 | CG11430-RA | 236..1289 | 33..1085 | 4975 | 98.6 | Plus |
| olf186-F-RB | 2632 | CG11430-RB | 788..1841 | 33..1085 | 4975 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:15:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17859257..17859778 | 552..1073 | 2160 | 96.8 | Plus |
| 2R | 25286936 | 2R | 17851097..17851460 | 33..396 | 1820 | 100 | Plus |
| 2R | 25286936 | 2R | 17857640..17857800 | 395..555 | 805 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 22:15:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6730..6958 | 144..375 | 253 | 60.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6952 | 112..338 | 247 | 59.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6915 | 229..430 | 222 | 60.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6887 | 191..342 | 205 | 63.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6862 | 217..344 | 203 | 65.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2518 | 217..430 | 192 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2314..2505 | 146..342 | 189 | 58.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2498 | 238..431 | 185 | 61.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6819 | 249..353 | 183 | 71.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6882 | 289..430 | 177 | 62 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2331..2539 | 217..430 | 166 | 57.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2424 | 226..342 | 164 | 61 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2747..2857 | 228..343 | 162 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2467 | 267..430 | 154 | 59 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1155 | 218..313 | 140 | 61.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1052..1148 | 251..342 | 137 | 67 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2588..2643 | 287..342 | 118 | 67.9 | Plus |
| Stalker3T | 372 | Stalker3T STALKER3 372bp | 198..224 | 1154..1128 | 117 | 92.6 | Minus |
FMO03680.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:09 Download gff for
FMO03680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| olf186-F-RB | 788..1845 | 33..1091 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:16:57 Download gff for
FMO03680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| olf186-F-RA | 219..1276 | 33..1091 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:09:22 Download gff for
FMO03680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| olf186-F-RB | 788..1845 | 33..1091 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:09:22 Download gff for
FMO03680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17851094..17851460 | 32..396 | 99 | -> | Plus |
| 2R | 17857642..17857797 | 397..552 | 100 | -> | Plus |
| 2R | 17859258..17859778 | 553..1073 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:09 Download gff for
FMO03680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13745147..13745302 | 397..552 | 100 | -> | Plus |
| arm_2R | 13738599..13738965 | 32..396 | 99 | -> | Plus |
| arm_2R | 13746763..13747283 | 553..1073 | 97 | == | Plus |
