FMO03681.5prime Sequence
754 bp (754 high quality bases) assembled on 2008-08-11
> FMO03681.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGGCACCACGA
CAAAGTTTGTGAACGAGTTCTGTGATATTATCGATTCCTATGGCGGGCGA
GATAAGGTGATGAAGGCATTGTGCTACAGTGCCAAACTGGTGGCTGGCTA
CCATGCCAAGCGGAATCCGGAACTAGCCAAGCGATACGCCACCGCCAGCT
CAAGGATCTCAGGTGCGAGAGCCACACTGCGTCTCATCGACGACATACCC
ATGATCCAATATGCTTTGGAGTATGGCTTGGGCGAGAATGAGCCCGATCG
CGTCATGCAAGTGCTGGGAGTGACGGCCAACATTGTGGATTTGCTCTACT
ATCCCATCGAGAAGGTGTGCTGGCTGGCCGAGCACAAGATTGTGGATGTC
AAGAATGCGGATAACTGGGACAATGTCAACTCCATATTCTGGGTGCTTTC
GGTGTACCTGAACCTCATGAGGACAATGCGGAATTTTTCACTGAATCAGG
AAAAGCTGAACCGAACGAATAATATAAACGAATTGGATGTGAAAACGTTG
ACCAAGCACCGCCTGGAGATGGTGTCCATCGTTCGGATCTCACTCGACTT
TGTGCACGCCGTCAGCACGCTGCCGAAAGGATATTTGTGGGGCGGCAAGC
TGTCCACCCTGCAGGTGGGTGCTATTGGCACCTTATCCGCTGGCCTGGGC
ATCTACCAGATCTTTGCCAAGAGAAGACTGAACAAGGCAAGCTTTCTAGA
CCAT
FMO03681.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:30:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13827-RA | 989 | CG13827-RA | 114..812 | 38..736 | 3495 | 100 | Plus |
| CG13827-RB | 909 | CG13827-RB | 100..732 | 104..736 | 3165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:29:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23259675..23260042 | 105..472 | 1840 | 100 | Plus |
| 3R | 32079331 | 3R | 23260221..23260425 | 532..736 | 1025 | 100 | Plus |
| 3R | 32079331 | 3R | 23258478..23258548 | 38..108 | 355 | 100 | Plus |
| 3R | 32079331 | 3R | 23260100..23260161 | 470..531 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:29:59 has no hits.
FMO03681.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:35 Download gff for
FMO03681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13827-RA | 107..812 | 31..736 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:17:32 Download gff for
FMO03681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13827-RA | 103..808 | 31..736 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:16:18 Download gff for
FMO03681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13827-RA | 107..812 | 31..736 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:16:18 Download gff for
FMO03681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23258471..23258546 | 31..106 | 94 | -> | Plus |
| 3R | 23259677..23260041 | 107..471 | 100 | -> | Plus |
| 3R | 23260102..23260161 | 472..531 | 100 | -> | Plus |
| 3R | 23260221..23260425 | 532..736 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:35 Download gff for
FMO03681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19084193..19084268 | 31..106 | 94 | -> | Plus |
| arm_3R | 19085399..19085763 | 107..471 | 100 | -> | Plus |
| arm_3R | 19085824..19085883 | 472..531 | 100 | -> | Plus |
| arm_3R | 19085943..19086147 | 532..736 | 100 | | Plus |
