FMO03684.5prime Sequence
523 bp (523 high quality bases) assembled on 2008-08-11
> FMO03684.5prime
AACTTCGTATAGCATACATAATACGAAGTTATCAGTCGACATGAAAATTG
GCTTGTGCGCATTCAGCGGGTACAAAATCTACCCCGGTCATGGCAAGACC
ATGGTCAAGATCGATGGCAAGTCGTTCACCTTCCTGGACAAGAAGTGCGA
GCGCTCCTACCTGATGAAGCGCAATCCCCGCAAGGTTACGTGGACCGTGC
TGTACCGCCGGAAGCACCGCAAGGGAATCGAGGAGGAGGCCTCCAAGAAG
CGCACCCGCCGCACCCAGAAGTTCCAGCGCGCCATCGTCGGTGCCTCGCT
GGCCGAGATTCTGGCCAAGCGTAACATGAAGCCCGAGGTGCGCAAGGCGC
AGCGCGACCAGGCCATCAAGGTGGCCAAGGAGCAGAAGCGTGCCGTCAAG
GCCGCCAAGAAGGCTGCTGCCCCCGCTCCCGCTAAGAAGTCGGCGCCCAA
GCAGAAGGCCGCCAAGGTCACGCAGAAGGCTGCTCCCCGCGTCGGAGGCA
AGCGGGCAAGCTTTCTAGACCAT
FMO03684.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL24-RC | 829 | CG9282-RC | 72..536 | 41..505 | 2325 | 100 | Plus |
| RpL24-RB | 1226 | CG9282-RB | 33..497 | 41..505 | 2325 | 100 | Plus |
| RpL24-RA | 790 | CG9282-RA | 33..497 | 41..505 | 2325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13394416..13394801 | 505..120 | 1930 | 100 | Minus |
| 2L | 23513712 | 2L | 13394865..13394940 | 121..46 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:25:20 has no hits.
FMO03684.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:43 Download gff for
FMO03684.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL24-RA | 26..500 | 33..509 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:16:02 Download gff for
FMO03684.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL24-RA | 49..523 | 33..509 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:34 Download gff for
FMO03684.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL24-RA | 26..500 | 33..509 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:34 Download gff for
FMO03684.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13394412..13394799 | 122..509 | 99 | <- | Minus |
| 2L | 13394865..13394944 | 39..121 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:43 Download gff for
FMO03684.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13394412..13394799 | 122..509 | 99 | <- | Minus |
| arm_2L | 13394865..13394944 | 39..121 | 96 | | Minus |
