FMO03685.5prime Sequence
699 bp (699 high quality bases) assembled on 2008-08-11
> FMO03685.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAGCAGCTCCGA
GGAAGTCTCCTGGGTCACCTGGTTCTGTGGACTTCGTGGCAATGAGTTCT
TCTGCGAGGTGGATGAGGACTACATACAGGATAAATTCAATTTAACTGGT
TTAAATGAGCAGGTACCCAACTATCGGCAAGCGTTGGACATGATCTTGGA
CTTGGAACCGGAGGACGAGCTCGAGGACAATCCACTGCAGTCCGACATGA
CCGAGCAGGCCGCCGAGATGCTCTACGGCCTCATACACGCCAGATATATA
CTAACAAATCGCGGCATCGCTCAAATGATCGAGAAATATCAAACTGGCGA
TTTCGGACATTGTCCACGTGTCTACTGTGAAAGTCAGCCCATGCTGCCAT
TGGGTCTGTCGGACATCCCCGGCGAGGCAATGGTTAAGACCTATTGCCCC
AAGTGCATTGACGTGTACACACCAAAATCGTCGCGTCACCACCATACCGA
TGGCGCCTATTTCGGCACTGGATTTCCACACATGCTCTTCATGGTGCATC
CCGAATATCGTCCCAAGCGTCCTACTAATCAGTTTGTTCCAAGGCTATAT
GGATTTAAAATACACAGCTTAGCTTATCAAATTCAGCTGCAGGCAGCAGC
CAATTTTAAAATGCCACTACGAGCGAAAAACGCAAGCTTTCTAGACCAT
FMO03685.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:17:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CkIIbeta-RH | 2376 | CG15224-RH | 37..681 | 37..681 | 3225 | 100 | Plus |
| CkIIbeta-RG | 997 | CG15224-RG | 72..716 | 37..681 | 3225 | 100 | Plus |
| CkIIbeta-RD | 966 | CG15224-RD | 41..685 | 37..681 | 3225 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:17:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11793973..11794167 | 211..405 | 975 | 100 | Plus |
| X | 23542271 | X | 11794818..11795009 | 403..594 | 960 | 100 | Plus |
| X | 23542271 | X | 11793796..11793900 | 107..211 | 525 | 100 | Plus |
| X | 23542271 | X | 11795103..11795186 | 592..675 | 420 | 100 | Plus |
| X | 23542271 | X | 11793447..11793521 | 37..111 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:17:40 has no hits.
FMO03685.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:29 Download gff for
FMO03685.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CkIIbeta-RD | 36..688 | 32..685 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:17:46 Download gff for
FMO03685.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CkIIbeta-RC | 395..1051 | 25..685 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:53:43 Download gff for
FMO03685.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CkIIbeta-RD | 36..688 | 32..685 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:53:43 Download gff for
FMO03685.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11795105..11795191 | 594..680 | 97 | | Plus |
| X | 11793436..11793518 | 25..108 | 94 | -> | Plus |
| X | 11793798..11793900 | 109..211 | 100 | -> | Plus |
| X | 11793974..11794165 | 212..403 | 100 | -> | Plus |
| X | 11794819..11795008 | 404..593 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:29 Download gff for
FMO03685.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11687469..11687551 | 25..108 | 94 | -> | Plus |
| arm_X | 11687831..11687933 | 109..211 | 100 | -> | Plus |
| arm_X | 11688007..11688198 | 212..403 | 100 | -> | Plus |
| arm_X | 11688852..11689041 | 404..593 | 100 | -> | Plus |
| arm_X | 11689138..11689224 | 594..680 | 97 | | Plus |
