FMO03688.5prime Sequence
841 bp (841 high quality bases) assembled on 2008-08-11
> FMO03688.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGGCGGGCTGGCGAG
GACGAGGCCTACGCGCCACGCTGCTGGCCGTGCTCGCGTTACTCTCGGTC
ACTCACTCGGTGCGCATCACCAACCTGCGGGTGCCACGCACCTACACGCT
GTTCCGAGACCACGAACCCGATCCTCTGGTGCTCGACTGCGAGGTGGAGA
TCGGGCCGCGGGAGCAAGGATTCGTCCTCAAATGGCTGTTCAATAACCAC
TCCATCTACCAGTGGATACCATCGGTCAAGGGGTTCGCCATGGGCTTCAT
GAAGTCGAAGATAGACACCAAAATATTCACTATGGAGGGCAGTCCCGGTG
TTATATCGATAAAGAATCCCGACTGGAACATGACGGGGGAGTACACCTGT
GCAGTGCAGACCTTCGAGTCCACGGATAAGCGGAGTGCCCGCCTGCAAAT
AATCGTTCCTGAATCGGATTTCATGCTGGAAGCGCGGATGAGCGGTTCGC
GTATGGACGTGGACATCATGTGTGCGGTCCAGCACGTCTTCCCGCAACCC
ATGCTGTCTGTCATGTTTGACACCCACATACTGGACTCGGTACTGACGCA
GTTGGACCAGGACCCCAGTGGCCTCTACAGCATGACCGTTCGCACCCGCA
TTCCTAGAGATCAACTCGAGTCCCCCACCCCAATCACCTGTGCGTTTATC
CTAGTTGGCACCAACTACACCAAGCGCCGGGAGACTATTTTCTATGATAA
GGCCTCAACTATACAACGCAAGTGGACAACGGTCGCCGTAGTCATGTCCA
TCGCATCCTTAGCTCTAAGCAGTGCAAGCTTTCTAGACCAT
FMO03688.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:17:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13532-RA | 1918 | CG13532-RA | 606..1395 | 34..823 | 3950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:16:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22871941..22872136 | 98..293 | 980 | 100 | Plus |
| 2R | 25286936 | 2R | 22873455..22873641 | 565..751 | 920 | 99.5 | Plus |
| 2R | 25286936 | 2R | 22872229..22872392 | 292..455 | 820 | 100 | Plus |
| 2R | 25286936 | 2R | 22873267..22873378 | 455..566 | 560 | 100 | Plus |
| 2R | 25286936 | 2R | 22873827..22873904 | 746..823 | 390 | 100 | Plus |
| 2R | 25286936 | 2R | 22871795..22871859 | 34..98 | 325 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:17:00 has no hits.
FMO03688.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:13 Download gff for
FMO03688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13532-RA | 598..1401 | 26..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:17:41 Download gff for
FMO03688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13532-RA | 496..1299 | 26..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:53:23 Download gff for
FMO03688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13532-RA | 598..1401 | 26..832 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:53:23 Download gff for
FMO03688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22871787..22871859 | 26..98 | 94 | -> | Plus |
| 2R | 22871942..22872135 | 99..292 | 100 | -> | Plus |
| 2R | 22872230..22872392 | 293..455 | 100 | -> | Plus |
| 2R | 22873268..22873376 | 456..564 | 100 | -> | Plus |
| 2R | 22873455..22873636 | 565..746 | 100 | -> | Plus |
| 2R | 22873828..22873910 | 747..832 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:13 Download gff for
FMO03688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18759310..18759382 | 26..98 | 94 | -> | Plus |
| arm_2R | 18759465..18759658 | 99..292 | 100 | -> | Plus |
| arm_2R | 18759753..18759915 | 293..455 | 100 | -> | Plus |
| arm_2R | 18760791..18760899 | 456..564 | 100 | -> | Plus |
| arm_2R | 18760978..18761159 | 565..746 | 100 | -> | Plus |
| arm_2R | 18761351..18761433 | 747..832 | 95 | | Plus |
