FMO03690.5prime Sequence
1213 bp (1029 high quality bases) assembled on 2008-08-11
> FMO03690.5prime
TATAGCATACATTATACGAAGTTATCAGTCGACATGGTGCCCATCGGAGC
CGTGCACGGCGGCCATCCCGGCGTAGTGCATCCGCCACAGCAACCACTGC
CCACGGCGCCCAGCGGCCCAAACTCGCTGCAGCCGAACTCGGTGGGCCAG
CCGGGGGCCACCACCTCCTCGAACAGCAGCGCCTCCAACAAGAGCTCGCT
ATCCGTCAAGCCCAACTACACGCTCAAGTTCACGCTGGCCGGGCACACCA
AGGCGGTGTCGGCGGTCAAGTTCAGTCCGAATGGCGAGTGGCTGGCCAGC
TCCTCCGCTGATAAACTAATCAAAATCTGGGGAGCATACGATGGCAAGTT
CGAGAAGACCATTTCGGGCCACAAGCTGGGCATCAGCGATGTGGCCTGGA
GCTCAGACTCGCGACTCCTCGTGAGCGGCAGTGATGACAAGACGCTCAAG
GTCTGGGAGCTGAGCACCGGGAAGAGCTTGAAAACTCTGAAGGGCCACAG
CAACTATGTGTTCTGCTGCAACTTTAATCCGCAGTCCAATCTGATCGTCT
CCGGCAGCTTCGACGAGAGCGTTCGCATATGGGATGTGCGCACCGGCAAG
TGTCTGAAGACTCTACCCGCCCATTCCGATCCCGTTTCGGCGGTACATTT
CAATCGCGACGGATCGCTGATCGTGAGCAGCAGCTACGACGGCCTCTGTC
GCATATGGGACACGGCCAGTGGACAGTGCTTGAAAACCCTGATCGACGAC
GACAATCCGCCCGTCAGCTTTGTAAAGTTCTCGCCCAATGGCAAGTACAT
TTTGGCCGCCACGCTGGATAATACGCTCAAGTTGTGGGACTACTCGAAAG
GGCAAGTGCCTGAAGACGTATACGGGTCACAAGAATGAGAAGTACTGCAT
ATTCGCCAACTTCTCGGTGACGGGAGGAAAGTGGATCGTGAGTGGCAGCG
AGGACACATGTCTACATTTGGATCTGCAGAGCAGTAGTGTGCAAAAGCTG
CAGGGACCCACCGATACCGTCTGTGCACGCTGCATCCCACGAGAACATCA
TGCTCCGCGGCGCTCGGAGAACGACAGACCATCAGCTGTGGGAGTCGATC
ACAGCAGCTTTCTAGACATCGTGGCGCGGCCCAGTAATGGTCTACTATCT
AACTAATCTATCCACACTAGCTAGAGATCTGGCCTAGACATGGGCTGTGA
AATCTCTCACCAC
FMO03690.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:16:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wds-RB | 1973 | CG17437-RB | 297..1376 | 31..1097 | 4940 | 98.2 | Plus |
| wds-RA | 1634 | CG17437-RA | 297..1376 | 31..1097 | 4940 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:16:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2586761..2587386 | 305..931 | 3085 | 99.8 | Plus |
| X | 23542271 | X | 2586276..2586549 | 31..304 | 1370 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:16:40 has no hits.
FMO03690.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:07 Download gff for
FMO03690.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wds-RA | 295..1385 | 27..1107 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:17:22 Download gff for
FMO03690.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wds-RA | 298..1388 | 27..1107 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:53:12 Download gff for
FMO03690.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wds-RA | 295..1385 | 27..1107 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:53:12 Download gff for
FMO03690.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2586274..2586549 | 27..304 | 99 | -> | Plus |
| X | 2586761..2587386 | 305..931 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:07 Download gff for
FMO03690.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2480307..2480582 | 27..304 | 99 | -> | Plus |
| arm_X | 2480794..2481419 | 305..931 | 99 | -> | Plus |
