FMO03696.5prime Sequence
956 bp (956 high quality bases) assembled on 2008-07-21
> FMO03696.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGGGTTTCGTTAAG
GTAGTCAAGAACAAGCAGTACTTTAAGAGGTACCAAGTCAAGTTCCGAAG
GCGTCGCGAAGGAAAGACCGATTACTATGCCAGGAAACGCCTAACATTTC
AGGACAAGAACAAGTACAACACTCCCAAGTACCGTTTGATCGTACGTTTG
TCCAACAAGGACATCACAGTACAGATCGCCTATGCTCGCATCGAGGGTGA
TCGCGTGGTGTGCGCTGCTTATTCCCATGAGCTTCCCAAATACGGGATCC
AGGTTGGATTGACCAACTACGCTGCTGCTTACTGCACAGGCCTGCTGGTC
GCCCGTCGTGTCCTTAACAAGTTGGGACTGGACTCCCTATATGCAGGATG
CACTGAAGTGACTGGTGAGGAGTTCAACGTCGAGCCTGTTGATGACGGCC
CAGGGGCATTCCGTTGCTTCTTGGATGTTGGACTCGCTCGTACTACAACT
GGTGCCCGTGTGTTTGGCGCTATGAAGGGAGCAGTTGATGGTGGTCTAAA
CATACCTCACTCTGTGAAACGCTTTCCTGGATACTCTGCTGAAACCAAGA
GCTTTAATGCCGATGTGCATCGCGCTCATATATTTGGCCAGCACGTTGCA
GACTATATGCGTTCTTTGGAGGAGGAGGATGAGGAGAGCTTCAAAAGGCA
GTTTAGCCGATACATCAAGTTGGGCATTCGTGCTGATGATCTTGAGGATA
TCTATAAAAAGCCCACCAGGCAATTCGTAACGACCCTACACACAAGGTCA
CCGCTAAGAAGTCTTCTGCCGTTACGAAGAAAAGGTGGGATTGCTAAGAA
ACTCACAAACGAGCAACGGAAGACTAAGATTGCAGCTCATAAGGCAGCAT
ATGTTGCCAAGCTGCAGTCTGAAACTGAGCTGCAAGCTTTCTAGACCATT
CGTTTG
FMO03696.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL5-RG | 1945 | CG17489-RG | 94..987 | 36..929 | 4410 | 99.7 | Plus |
| RpL5-RH | 3835 | CG17489-RH | 346..1239 | 36..929 | 4410 | 99.7 | Plus |
| RpL5-RB | 1024 | CG17489-RB | 57..950 | 36..929 | 4410 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 22535617..22536056 | 740..301 | 2200 | 100 | Minus |
| 2L | 23513712 | 2L | 22536113..22536379 | 304..38 | 1335 | 100 | Minus |
| 2L | 23513712 | 2L | 22534875..22535063 | 929..741 | 835 | 98.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:30:46 has no hits.
FMO03696.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:17 Download gff for
FMO03696.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL5-RA | 80..973 | 36..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:18:35 Download gff for
FMO03696.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL5-RB | 94..987 | 36..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:19:46 Download gff for
FMO03696.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL5-RB | 57..950 | 36..929 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:19:46 Download gff for
FMO03696.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 22534875..22535063 | 741..929 | 98 | <- | Minus |
| 2L | 22535617..22536054 | 303..740 | 100 | <- | Minus |
| 2L | 22536115..22536381 | 35..302 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:17 Download gff for
FMO03696.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 22427607..22427795 | 741..929 | 98 | <- | Minus |
| arm_2L | 22428349..22428786 | 303..740 | 100 | <- | Minus |
| arm_2L | 22428847..22429113 | 35..302 | 99 | | Minus |
