FMO03701.5prime Sequence
1246 bp (1016 high quality bases) assembled on 2008-07-21
> FMO03701.5prime
TCGTATAGCATACCTTATACGAAGTTATCAGTCGACATGTCTCTAAAAGA
AGATCCAAGCCAGCGCACGTGCACAGGATTTACGATCGGATTCAAACTGC
TGTCCAAGAAACTGGCGGAAAACATCCTAGGCACCGGAATTGTGGATTTT
GAGAATTGTCTCTATGAGTGCCAATTTGCCAGCGATAGCATTGAAGGCTT
TTCCGTGGGCCTCCTTGGAGGAGAGTTTAAACTGAAGTCCAAATCGAACA
CCAACTGGTTGGAATTTGTGCTCAGACCAAAGCTCTTAAGCTGGTCTCAG
TCCAAGCAGGATGAAGCAAAGGTGAAGTCACTAGGTTTGGTTAATGTGGA
AAAGTACAATGATCTGTACAAGGAGTTGAAACAGAGGCATTCACAACGCC
TGCTGGAACACTGGAAGACCGCACAGGAGTCCACGGATCCGCTCAAGTTC
ATTTACGAGGATTTGGCTATCGCTGCTTATCTTATAGTTTTGTGGAGTCA
AACACAATCGGAGCCCACTGCCTTCGCTGATTTGGGTTGTGGAAACGGTC
TGTTAGTTCATGTCCTCAACGCCGAGGGCTACAAAGGGTATGGCTACGAT
ATAAGAAAGCGAAAGCTATGGTCCCTCTATCCACCGGATACCCAAAGGAG
CCTCATTGAAAAGGCCGTGGAGCCCAACAGCTTCCGCTTGGATTTTCCGG
GTGTGGATTGGTTGATTGGTAACCATTCGGACGAGTTGTCTCCTTGGCTA
CCGGTTTTGGCTGGTCGTTTGAACATTAACTATTTCCTACTGCCCTGCTG
TCCCTTTGAACTGTCGGGAGCCAAGTTTCGCAGGCGGAATACGAAGATAA
GTGCCTACCAGGATTTCTTTCAATACGTCACTCAGGTCTCTCATGAATGT
GGCTATGAGATCCTACAAGACCGTCTAAAAATACCAGCACCAAGCGATTG
GCTCTGCTGGGAATTAAGAGAAAAGCCTCCAAGGCCTATGAAGATCCTGG
ATTACTTTGTCCCAGAAGAGCTTAGAAAGTATTAGACCGGGAGATGCCAA
AATTAAGCTTGCGCGAATAGGAGGATAGCGTTCGAATTGGCACGCAAGTG
GATTAAGAACCTTATTGATGCCCTAAGTGTTAAATCTTCAACTGATTCTT
GACCTCTAACGAGAAATATGGCTGGGTCGTCGGCCCATGAAAGATTGACC
GGCTCTCACCCAGAGGAGAGGACGCTTAATGGTGCATCTTATTAAC
FMO03701.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9386-RA | 1652 | CG9386-RA | 176..1360 | 37..1218 | 5145 | 96.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9554108..9555064 | 1103..145 | 4390 | 98.1 | Minus |
| 3R | 32079331 | 3R | 9555125..9555233 | 145..37 | 530 | 99.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:41:49 has no hits.
FMO03701.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:29 Download gff for
FMO03701.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9386-RA | 168..1246 | 30..1111 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:22:18 Download gff for
FMO03701.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9386-RA | 149..1227 | 30..1111 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:12:01 Download gff for
FMO03701.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9386-RA | 168..1246 | 30..1111 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:12:01 Download gff for
FMO03701.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9554125..9555063 | 146..1086 | 98 | <- | Minus |
| 3R | 9555125..9555241 | 30..145 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:29 Download gff for
FMO03701.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5379847..5380785 | 146..1086 | 98 | <- | Minus |
| arm_3R | 5380847..5380963 | 30..145 | 96 | | Minus |
