Clone FMO03703 Report

Search the DGRC for FMO03703

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:37
Well:3
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG9586-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO03703.5prime Sequence

679 bp (679 high quality bases) assembled on 2008-07-21

> FMO03703.5prime
TTCGTATAGCATACATAAAACGAAGTTATCAGTCGACATGAGCGCCACGG
ATGACTTCCAGAGCTGGCTCAACGAGCAGCTGCGCAAATTGAACACCGAC
GAGAACGTTTTCGGTTCGTATATTATTGGAATTTTGGAGGGCGACGAAAC
GACAGATGAAAAAACCGAGGCTCTCGAGGGAATTCTCAGCGAAACAGGTT
CCGCCAACATTGACGAACTGGTGGCCACCATACTACAAAAGTGGCTACAG
AGCCATCCCAGCGCCGATGATCCGCCGAAAAAAGGTCTGGATATCGATGT
GAATGCCCAGTTGGCCAAGTTGCTGGAGCAACAGAAGCTGCAACCCGCCG
TAAACAAGGAGCGTGAATACACCGAAGAGGAGCGTCGCATCAAGCAGCAG
ATTCTAGCTCAATACTCCCAGACTGCCGTTGCCAACGAGGACGACGAGAA
TTCCGAGGCGGAAAGCGAGGATGACAGTGGAACGCTCACCAAGAATACCA
ACAAATCGGATGTCCAGGCGCTAGCCAAGGAAAAGCGGGAGCAGGCCCGA
ATGGATAGTGCGGCCAAAAAGCAAAAGGACAAAGAGGATCGGGAAAAGCA
AAAGCAACTGCGCGAGGAAAAGAAGGAGAAACGCAAAACCGTCAAAGGCG
AACGGCGTCGAGCAAGCTTTCTAGACCAT

FMO03703.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:09:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG9586-RB 936 CG9586-RB 130..754 37..661 3125 100 Plus
CG9586-RC 966 CG9586-RC 130..514 37..421 1925 100 Plus
CG9586-RC 966 CG9586-RC 542..784 419..661 1215 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:09:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9165603..9165845 661..419 1215 100 Minus
2L 23513712 2L 9165943..9166164 421..200 1110 100 Minus
2L 23513712 2L 9166223..9166385 199..37 815 100 Minus
Blast to na_te.dros performed on 2014-11-28 22:09:24 has no hits.

FMO03703.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:31 Download gff for FMO03703.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9586-RB 124..757 31..665 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:19:00 Download gff for FMO03703.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9586-RB 55..688 31..665 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:43:33 Download gff for FMO03703.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9586-RB 124..757 31..665 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:43:33 Download gff for FMO03703.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9165600..9165842 422..665 99 <- Minus
2L 9165943..9166164 200..421 100 <- Minus
2L 9166223..9166391 31..199 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:31 Download gff for FMO03703.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9165600..9165842 422..665 99 <- Minus
arm_2L 9165943..9166164 200..421 100 <- Minus
arm_2L 9166223..9166391 31..199 98   Minus