FMO03705.5prime Sequence
727 bp (727 high quality bases) assembled on 2008-07-21
> FMO03705.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGACAATTGCCG
AGCACGATAACGTCTTCATCTTTGTGCCAAATCTGATCGGCTACGCCCGC
ATCGTTCTGGCCCTGATCGCCTTCTGGTTCATGTCCACCAACTATGTGAT
CTCCGGCTGGTGTTATGTAACCTCCGCCCTCCTGGACGCCGTCGATGGAC
AAGCAGCCCGAGCCTTTAACCAAAGCACTCGCTTTGGCGCCATGCTAGAC
CAGTTGACCGATCGCTGCGGCACCACCGGCCTACTGGTCACCCTGGCCTA
CTTCTATCCCCGGTACATGTTCTGGTTCCAGCTGTCCATCGCCATCGACG
TGGCCTGTCACTGGCTCTTCATGCAGACGAGCGTTGTGGTCGGACGCAGC
TCGCACAAGGTGAATGACAACTTCATAATGCGATTGTATTACCAGAAGGA
CATACTCACATTCATGTGCTGCGTCAATGAGCTGTTTTACGTGTGCTTGT
ACCTCTTGCATTTCACCTACGGCCCGCTGATATTCGGCGCATCGCTCTTC
AAGATACTCGCCTTCCTCACGGGTCCCTTCGCCGTGCTCAAGGCCCTGAT
CTCGGTGATGCACGCCTACGTGGCGGGCATCGATCTGGCGGCCGTGGATG
TACGCGAGCGGCAGGAGCGGCGCCAGAAGTCGGAGCCGGTGAGCGGCAAG
AAAGTGGAGGCAAGCTTTCTAGACCAT
FMO03705.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:01:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pis-RA | 1377 | CG9245-RA | 150..821 | 38..709 | 3345 | 99.9 | Plus |
| Pis-RB | 1652 | CG9245-RB | 612..1096 | 225..709 | 2410 | 99.8 | Plus |
| Pis-RB | 1652 | CG9245-RB | 150..336 | 38..224 | 935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:01:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15702007..15702185 | 709..531 | 880 | 99.4 | Minus |
| X | 23542271 | X | 15702508..15702662 | 379..225 | 775 | 100 | Minus |
| X | 23542271 | X | 15702264..15702415 | 530..379 | 760 | 100 | Minus |
| X | 23542271 | X | 15703183..15703319 | 225..89 | 685 | 100 | Minus |
| X | 23542271 | X | 15703569..15703621 | 90..38 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:01:24 has no hits.
FMO03705.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:11 Download gff for
FMO03705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pis-RA | 150..825 | 38..713 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:20:55 Download gff for
FMO03705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pis-RA | 145..820 | 38..713 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:00 Download gff for
FMO03705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pis-RA | 150..825 | 38..713 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:00 Download gff for
FMO03705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15702264..15702415 | 379..530 | 100 | <- | Minus |
| X | 15702509..15702662 | 225..378 | 100 | <- | Minus |
| X | 15703184..15703318 | 90..224 | 100 | <- | Minus |
| X | 15703570..15703621 | 38..89 | 100 | | Minus |
| X | 15702002..15702185 | 531..713 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:11 Download gff for
FMO03705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15597217..15597351 | 90..224 | 100 | <- | Minus |
| arm_X | 15597603..15597654 | 38..89 | 100 | | Minus |
| arm_X | 15596035..15596218 | 531..713 | 98 | <- | Minus |
| arm_X | 15596297..15596448 | 379..530 | 100 | <- | Minus |
| arm_X | 15596542..15596695 | 225..378 | 100 | <- | Minus |
