FMO03712.5prime Sequence
1248 bp (1010 high quality bases) assembled on 2008-07-21
> FMO03712.5prime
AACTTCGTATAGCATAAAAAAACAAAGTTATCAGTCGACATGGATTTCAA
ATTCCTAATGATACTCATCCTGGGCTTTGGCTTTATGTTCGTCTTTACGG
CATTCCAGACCATGTGTAACATCGAGAAAACCATACTGGATAGCATTTCC
CAGGAAGATGATACCTTCAAGGGTGAGGGCTACACCAGCCTGGCCATTAT
CTACCTGTTCTTCTCGCTCTCCAATTGGCTGGCACCCTCGTTCATTTCGT
TCACCGGACCACGAGTGGCCATGGTCGTGGGAGCACTGACCTATACAGCC
TTCATGATCACGTTCATGTTCCCGTCGACGGTATTGCTGTACGTGGGCAG
CGCAGTGCTGGGATTGGGTGCCTCGATCACTTGGACGGGACAGGGAACGT
ATCTGGCGCGCTGCAGTGAATCTTCCACGATTTCCCGTAACTCTGGCGTC
TTCTGGGCCCTGCTGCAGTGCAGCATGTTCATTGGGAATCTGTTCGTGTA
CTATCAGTTCCAGGACAAGACCCGCATCGACAAGGAGACACGGAATCTGG
TCATCGGCGTGCTCACGGTAATTGCTGTGCTGGGCATCGTGTTTCTGGCC
GCACTGAGATTCATGGCCGATAATGCCGAGCACGACAACGAGCTGGAACA
GAAGCACACGGGCTGTGGACAGGCCATATACGCATTGAAAGTCCGCAGGA
CAATTGTTCCTCACCAAAAAGATGCTGCTCCTTAGTCTGGCCTTCTTTTA
CACAGGCCTGGAGCTGTCATTCTTTAGCGGAGTTTTTGGATCAGCGATTG
CATTCACCACGAAAATAGCCGAAACACCGAAGGAGATCGTTGGACTGGTG
GGCATTTGCATTGGAGCCGGCGAGGTCTTTGGAGGAGGACTATTCGGCAT
ACTGGGCAACAAGACGACGAGATATGGACGCGATCCCATCGTGATTGCCG
GCTATGTGATGCACATGCCAGCCTTCTTCATGACGTTCATCAACCTGCCG
AACAGTGCACCGTTTAAAGAAACCACCGAATATATCCTTATCTGGACCCG
CCCCCGAAGCCAGCATCGCCTTTGATGTGTGCCTTTCTTTGGGCCTGGGC
GAATGCCCTGTTCACCACCTCGAAATCCTACTTCCATGCCTTGGCGGGAG
ATATGTACATGGCCTGGAGAGCCTTGACTGTCAGTCACATTCGTGCGCGC
GGCCATAACTTTCTTTACACTCCTCGCACATCTGCGGTGGTGCTACAG
FMO03712.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:22:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18549-RA | 2004 | CG18549-RA | 344..1441 | 40..1148 | 5075 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:22:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12454885..12455343 | 297..756 | 2250 | 99.8 | Plus |
| 3R | 32079331 | 3R | 12455408..12455752 | 754..1102 | 1395 | 96.6 | Plus |
| 3R | 32079331 | 3R | 12454642..12454813 | 125..296 | 860 | 100 | Plus |
| 3R | 32079331 | 3R | 12449639..12449725 | 40..126 | 435 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:22:16 has no hits.
FMO03712.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:29 Download gff for
FMO03712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18549-RA | 337..1418 | 32..1121 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:18:58 Download gff for
FMO03712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18549-RA | 337..1418 | 32..1121 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:12:31 Download gff for
FMO03712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18549-RA | 337..1418 | 32..1121 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:12:31 Download gff for
FMO03712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12449635..12449725 | 34..126 | 94 | -> | Plus |
| 3R | 12454644..12454813 | 127..296 | 100 | -> | Plus |
| 3R | 12454885..12455342 | 297..755 | 99 | -> | Plus |
| 3R | 12455410..12455769 | 756..1121 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:29 Download gff for
FMO03712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8275357..8275447 | 34..126 | 94 | -> | Plus |
| arm_3R | 8280366..8280535 | 127..296 | 100 | -> | Plus |
| arm_3R | 8280607..8281064 | 297..755 | 99 | -> | Plus |
| arm_3R | 8281132..8281491 | 756..1121 | 95 | | Plus |
