FMO03713.5prime Sequence
1211 bp (1017 high quality bases) assembled on 2008-07-21
> FMO03713.5prime
ATAACTTCGTATAGCATAATAAAAAAAAGTTATCAGTCGACATGTCTCGC
AACCATCAGCGACCAAATCTTGGTCTGGTCGATGCACCGCCTAATGATCA
TGTCGAAGAATATGTAGTGGAGAAAATCTTAGGCAAACGGTTTGTTAATG
GGCGTCCCCAGGTTCTGGTGAAGTGGAGCGGTTTTCCGAACGAGAACAAC
ACCTGGGAACCATTGGAAAACGTAGGCAACTGCATGAAGCTGGTCTCCGA
CTTCGAGTCGGAGGTCTTCAGGCTGCATCGGAAGGCCGCGGCTAAATCTG
TCGGGAAATCGAAGTCAAGTCCTAGCAGCAGCGGTCCATTGATCACCGAG
AATGGCCCCAGCAGCTCTAAGAAAACACAACAACATTCCAAGTCGGTGCA
GGCAAAAAACACAGCTGGAATGTCGAAGATGAATCAGAAAAAAGGAAAGA
ATATTAAGAAAACGGCGGGAAAAATCAAAGATATTGAAAATTATCCCAAA
ACTCAGATGCCTAGTACTAGCCAAGTCTCCACAGATTCAACTGAAGTTTT
CGACGGCAATCCATCAGCCACAACGACGAACATGATTAAGAGTCCCAGGA
TTCAAAGCCTTTTCAGTGATCTGAACTTGATCGAACCCACTAAAGACAAA
GATGTGGGGGACACATCTTTAAAAACGCCTCCCAAATCGCGCCGGCTTAT
TGAATTTCCTCAACGGGAAGACGCACCATTGTCTTCGAAACATGTGTCTC
CTATGCTGATTCGTAAAGAATCCCAACCATTGCAGAGCTCATGTACTGAT
GATTCGGATTTGGGTGAATCCTCTTCCAGTATGTCGCTTCCTACAGTATC
ATCGACCAGCTCTGAGAAATCGATCAAGGGTCACCAAATCGGAACCTAAA
ACGCTCGGCCAGATAAAGTTTTCGTCTAGGTCATCCGATGGTGGTCATGC
GGCTTCATCGCTGGGCGCACCAAAAGAAAGGGACATTGCTTGGATTTAAT
CTGGCAGTTGATTCCATGATTCCGAAGTGGAGGAGCCATGCGCCCGCTGT
TCCGCGCCGCAAGCGTAAAAAAACTTACCCCGATTTGAAAATTCCGGAAA
TGACGAATCTCGGTGTGAATCGCGACTGGAATCTGATAAATTCTTCCATG
CTACGATGAATGACGATCTATTTCATGTTGTTGAGGTGTAAGGGCGTTGC
TCTCTGATTAC
FMO03713.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rhi-RA | 1570 | CG10683-RA | 41..1195 | 42..1195 | 5150 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17632487..17633476 | 1032..42 | 4705 | 99 | Minus |
| 2R | 25286936 | 2R | 17632146..17632222 | 1124..1051 | 215 | 88.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:23:54 has no hits.
FMO03713.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:13 Download gff for
FMO03713.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rhi-RA | 37..1188 | 35..1188 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:17:33 Download gff for
FMO03713.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rhi-RA | 34..1185 | 35..1188 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:59:37 Download gff for
FMO03713.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rhi-RA | 37..1188 | 35..1188 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:37 Download gff for
FMO03713.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17632484..17633486 | 29..1036 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:13 Download gff for
FMO03713.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13519989..13520991 | 29..1036 | 98 | <- | Minus |
