FMO03714.5prime Sequence
533 bp (533 high quality bases) assembled on 2008-07-21
> FMO03714.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAAGCTGAGC
TTAGGATTATTTGTGATCTTCGCCGCTTTGATCGGCTTCACGTCGTCCAC
GGATGTGAGTCAGTGCCCGAAATCCAAATCGAAGGCCCTAGCTGCCGGTG
ACGTCTCCATTTCCAATTGCCCCAAGAGCAAGTGCATCCTGAAGCGCAAC
ACGGAGGCCAGCATTCAGATGAAGATCCGGCCGGAGCGCGACTTCCAGGA
GCTGACCTCCGACATCCAGGGCATTATCCTGGACGTGCCGCTGCCGTTCC
CAGGATATTACGGCACCAGCGCCTGTCCGCACATCTACGACGAGGCTGGC
GAGAAGAAGGTGGGCTGCCCACTGAAGGCCGGCCAGGTGTACACCTACAA
GAACAGCTTCAAGATCCTGCCCGTCTACCCGACCGTCAGTTTGGAGATCC
ACTGGGGATTGGGCGATAAGCATGGGGATGCGGCCTGCTTCCAGATACCC
GCCAAAATCAAGGCTGCAAGCTTTCTAGACCAT
FMO03714.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Npc2b-RA | 839 | CG3153-RA | 138..614 | 39..515 | 2385 | 100 | Plus |
| Npc2b-RB | 804 | CG3153-RB | 103..579 | 39..515 | 2385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14091809..14092200 | 124..515 | 1960 | 100 | Plus |
| 3R | 32079331 | 3R | 14091317..14091401 | 39..123 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:55:53 has no hits.
FMO03714.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:09:32 Download gff for
FMO03714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Npc2b-RB | 94..582 | 29..519 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:23:08 Download gff for
FMO03714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3153-RA | 117..605 | 29..519 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:44:32 Download gff for
FMO03714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Npc2b-RB | 94..582 | 29..519 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:44:32 Download gff for
FMO03714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14091308..14091401 | 29..123 | 96 | -> | Plus |
| 3R | 14091809..14092203 | 124..519 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:09:32 Download gff for
FMO03714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9917030..9917123 | 29..123 | 96 | -> | Plus |
| arm_3R | 9917531..9917925 | 124..519 | 99 | | Plus |
