FMO03718.5prime Sequence
1236 bp (1070 high quality bases) assembled on 2008-07-21
> FMO03718.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCGAGGTTG
AGCAGAGCGCTGCAGCTTACAGATATAGATGATTTTATTACGCCCTCACA
GATATGCATTAAGCCCGTGCAAATAGATAAGGCAAGGTCAAAGACTGGGG
CAAAGATAAAGATAAAAGGTGACGGCTGCTTTGAGGAATCAGAGAGTGGA
AATCTAAAACTTAATAAAGTTGATATTTCTCTGCAAGACTGTCTTGCGTG
TTCTGGTTGCATCACTTCAGCTGAAGAAGTCCTTATCACGCAGCAGAGCC
GAGAAGAGTTGCTTAAGGTCCTTCAAGAGAATTCAAAGAATAAGGCCTCT
GAAGACTGGGATAACGTGCGTACGATCGTGTTCACCCTTGCCACCCAGCC
TATACTAAGCTTAGCCTATCGCTATCAGATAGGTGTGGAGGATGCTGCCC
GTCATCTTAATGGGTATTTTCGCAGTTTGGGTGCCGACTATGTTTTGTCC
ACTAAGGTGGCGGACGATATTGCGCTGCTCGAATGTCGTCAAGAATTTGT
AGATAGGTACCGCGAAAATGAGAACTTGACCATGCTTAGCTCCTCTTGTC
CGGGGTGGGTTTGTTACGCGGAGAAAACACACGGAAACTTCTTATTGCCT
TACGTTTCCACGACCCGATCTCCTCAGCAAATAATGGGAGTGCTTGTGAA
GCAAATCCTTGCCGATAAGATGAATGTTCCTGCGTCACGAATCTACCATG
TGACCGTGATGCCTTGCTACGACAAGAAGCTTGAGGCCTCTCGAGAGGAC
TTTTTCAGCAAGGCAAATAACTCACGCGACGTAGACTGTGTAATCACTTC
AGTTGAGGTGGAACAGTTGCTTAGTGAGGCTCAGCAGCCGCTGTCGCAGT
ACGATCTCCTTGATTTAGACTGGCCATGGTCTAATGTACGCCCAGAATTC
ATGGTATGGGCTCACGAGAAAGACGCTATCTGGCGGTTACGCAGAACACA
TATTTAAGTACGCGCAAAACATATTTTCAACGAGATTTAAAAACGAGTTG
GAATTCAAACAGCTCAAAAACGCGACTTTAAAGAATTATAACTAAACAGA
ATGGCAACCTGTCTGAAATGGCAATGCTAACGGTTTCGGAACCTACAAAC
CTGTACAAACTGAAAGCTGTAAGTTCCAATAACCACGTTGTGAGTAATGG
CCTGTCCTCTGGGCCGTTTAAACGGGAGGAGACCTA
FMO03718.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17683-RA | 1696 | CG17683-RA | 88..1298 | 38..1231 | 5285 | 96.9 | Plus |
| CG17683-RC | 1785 | CG17683-RC | 88..1286 | 38..1231 | 5095 | 95.9 | Plus |
| CG17683-RE | 1823 | CG17683-RE | 200..1324 | 99..1231 | 4595 | 94.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 4131320..4131979 | 193..852 | 3300 | 100 | Plus |
| 2R | 25286936 | 2R | 4132034..4132295 | 850..1107 | 970 | 96.6 | Plus |
| 2R | 25286936 | 2R | 4131173..4131268 | 99..194 | 480 | 100 | Plus |
| 2R | 25286936 | 2R | 4131061..4131124 | 38..101 | 320 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:31:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tabor | 7345 | Tabor TABOR 7345bp | 2352..2448 | 272..177 | 122 | 59.8 | Minus |
FMO03718.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:28 Download gff for
FMO03718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17683-RA | 88..1195 | 38..1137 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:22:19 Download gff for
FMO03718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17683-RA | 125..1232 | 38..1137 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:19:55 Download gff for
FMO03718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17683-RA | 88..1195 | 38..1137 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:19:55 Download gff for
FMO03718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 4131061..4131124 | 38..101 | 100 | -> | Plus |
| 2R | 4131176..4131268 | 102..194 | 100 | -> | Plus |
| 2R | 4131322..4131979 | 195..852 | 100 | -> | Plus |
| 2R | 4132037..4132329 | 853..1137 | 94 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:28 Download gff for
FMO03718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18681..18773 | 102..194 | 100 | -> | Plus |
| arm_2R | 18566..18629 | 38..101 | 100 | -> | Plus |
| arm_2R | 18827..19484 | 195..852 | 100 | -> | Plus |
| arm_2R | 19542..19834 | 853..1137 | 94 | == | Plus |
