FMO03725.5prime Sequence
725 bp (725 high quality bases) assembled on 2008-07-21
> FMO03725.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGGAGCCCGA
CAGTCTCAATCCCGCGAGCCCCGAACCGTTTCGATGGAAAACCCAACTCC
TGCCGGCGTTATTGATATATCCGACGATGTGGTCAAGCGACTGAAGGCGG
GAATATCCCAGCAGGCTCGTGAGCACGCAGCCGCTGCGGAGGAATCGAAA
CCAGTGCCCAAGCCAACGACGAAGGCTGCCGCCAAGCCAGCCGCATCCTC
GCCAGCTGCTTCTCCTGCTCCGAAAGTATCCTCCTATCCCGCTGCAGTGC
CCATTTACGTCCAGGGAGGAGGACACACCATTAGCGCGGCCGATGTGCAG
CGCCAGATGAACCAGGAGCTAATCAAGAATGACGAGCTGTGGAAGGAGCG
CATGGCGAAGCTGGAGGAGAACCTCAAGAAGACCAACACCATCCTGGAGA
AGGAGTACGCCAATGCTGTAGAAAATGTGCACAAGCGATTCGTCAGCACC
GCGTCGTCGCACAAAGTGCCTCCCTGCCAGGACCTGAAATCCCAGCTGCT
TGCCTGCTACCGCGCGCATCCCGGGGAGACCTTGAAGTGCATTGAGGAGG
TGGCCCAATTCCGACAGTGCATCGATCTTCATCGCGTCCAGAAGCTGGAT
GCGGAACCAGAGTCGTCGAAAGTGACCTCCAAGGCCACCGTTCCTGCCAA
GGCGGCCGCAAGCTTTCTAGACCAT
FMO03725.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(3)03670-RA | 940 | CG1715-RA | 122..790 | 39..707 | 3330 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31052766..31053308 | 707..165 | 2715 | 100 | Minus |
| 3R | 32079331 | 3R | 31053587..31053713 | 165..39 | 620 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:06:05 has no hits.
FMO03725.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:38:58 Download gff for
FMO03725.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)03670-RA | 122..790 | 39..707 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:34:23 Download gff for
FMO03725.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)03670-RA | 119..787 | 39..707 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:16 Download gff for
FMO03725.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)03670-RA | 122..790 | 39..707 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:16 Download gff for
FMO03725.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31052766..31053307 | 166..707 | 100 | <- | Minus |
| 3R | 31053587..31053713 | 39..165 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:38:58 Download gff for
FMO03725.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26878488..26879029 | 166..707 | 100 | <- | Minus |
| arm_3R | 26879309..26879435 | 39..165 | 99 | | Minus |
