FMO03727.5prime Sequence
857 bp (857 high quality bases) assembled on 2008-07-21
> FMO03727.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGTCTTCGACT
GCGGAGTCTGGTGTGCAAAGTATTTGCTTTGCATATTCAATTTTATATTT
TTCGTGCTAGGCACAATTATATTCGGAGTCGGACTATGGCTGGCCGTGGA
CAAGCACTCGCTGATTGCTCTCCTCAAGTTGGTCGAGAGCGAGCGCATTG
AGCAATTTACACAGCCACAGGCCATAGAGCAGCTGGCCTATGTGCTCCTC
GTCATCGGAGCCGTCATGTTCTTCATGAGCTTCTTGGGCTATCTGGGAGC
CATGCGCGAGTCCCGCTGTCTGCTGTCGACGTATGGAACCTTTTTGATCC
TGCTGCTGATTGCCGAGATCGTTGCCGGCGGATTGGGTGCCTTCTTCAAG
GACAAAGTTCGTGCCGAGAGCAAAAACTTCTTGCAGACGACCATTACCAG
TTATTCGCTGGGCGAGAATGTGGATGCTACCTCACTGATGTGGAACCAAC
TGATGGGCAACTTTGGGTGCTGTGGCATCAATGACTATCACGATTTTGAT
GCCTCTCCAGCGTGGGTGAACGGCAAGGGTAACCGCACCATTCCCGATGC
CTGCTGTATCCTTAAGGATGTGGCCAAGTTGGTGCCACGCGACGAGGACT
GTACAACCAACCCCAGCGACAGCAACAGTTTCTACAAGAAGGGCTGCTAT
GAGGTGTTTACCGAGTGGCTGATTCGGCAACGTGAACTGGTCATCGTGGC
CATTGCGGTGGGCATTGTGCACCTGGTCCTCATTATTCTGGCCTTTGCTC
TGTGCAAGGCCTTTGCCAAATACAACGATATGCGTCTGGCAAGCTTTCTA
GACCATT
FMO03727.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp66E-RC | 2287 | CG4999-RC | 368..1168 | 38..838 | 4005 | 100 | Plus |
| Tsp66E-RA | 2261 | CG4999-RA | 342..1142 | 38..838 | 4005 | 100 | Plus |
| Tsp66E-RB | 2155 | CG4999-RB | 236..1036 | 38..838 | 4005 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8930379..8930748 | 331..700 | 1820 | 99.5 | Plus |
| 3L | 28110227 | 3L | 8930798..8930946 | 690..838 | 745 | 100 | Plus |
| 3L | 28110227 | 3L | 8928014..8928144 | 201..331 | 655 | 100 | Plus |
| 3L | 28110227 | 3L | 8926696..8926794 | 104..202 | 495 | 100 | Plus |
| 3L | 28110227 | 3L | 8926127..8926194 | 38..105 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:55:47 has no hits.
FMO03727.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:09:28 Download gff for
FMO03727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp66E-RB | 228..1039 | 30..842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:21:27 Download gff for
FMO03727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp66E-RC | 358..1169 | 30..842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:44:30 Download gff for
FMO03727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp66E-RB | 228..1039 | 30..842 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:44:30 Download gff for
FMO03727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8926119..8926192 | 30..103 | 94 | -> | Plus |
| 3L | 8926696..8926794 | 104..202 | 100 | -> | Plus |
| 3L | 8928016..8928144 | 203..331 | 100 | -> | Plus |
| 3L | 8930380..8930739 | 332..691 | 100 | -> | Plus |
| 3L | 8930800..8930949 | 692..842 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:09:28 Download gff for
FMO03727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8923900..8924049 | 692..842 | 98 | | Plus |
| arm_3L | 8919219..8919292 | 30..103 | 94 | -> | Plus |
| arm_3L | 8919796..8919894 | 104..202 | 100 | -> | Plus |
| arm_3L | 8921116..8921244 | 203..331 | 100 | -> | Plus |
| arm_3L | 8923480..8923839 | 332..691 | 100 | -> | Plus |
