Clone FMO03734 Report

Search the DGRC for FMO03734

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:37
Well:34
Vector:pMK33-CFH-BD
Associated Gene/TranscriptSmD3-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO03734.5prime Sequence

509 bp (509 high quality bases) assembled on 2008-07-21

> FMO03734.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCTATCGGA
GTGCCCATTAAAGTTCTGCACGAGGCCGAGGGCCACATAATCACTTGCGA
AACCATCACCGGCGAGGTGTACCGCGGCAAACTCATCGAGGCGGAGGACA
ACATGAACTGCCAAATGACCCAGATCACGGTGACCTACCGAGACGGACGC
ACCGCCAACCTGGAGAACGTCTACATTCGCGGCTCCAAGATCCGATTCCT
TATACTGCCCGACATGCTGAAAAATGCCCCGATGTTCAAGAAGCAGACGG
GCAAGGGACTTGGTGGGACGGCGGGACGGGGCAAGGCGGCCATTCTGCGC
GCACAGGCTCGTGGCAGAGGAAGAGGCGGACCTCCGGGCGGCGGAAGGGG
CACTGGTGGACCGCCAGGAGCTCCCGGCGGCAGCGGCGGACGCGGAGCAT
GGCAGGGAGGACCAACCGGCGGTCGAGGACGCGGCGGCCTGGCAAGCTTT
CTAGACCAT

FMO03734.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:34:04
Subject Length Description Subject Range Query Range Score Percent Strand
SmD3-RA 744 CG8427-RA 145..599 37..491 2275 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:34:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12168875..12169195 37..357 1605 100 Plus
2R 25286936 2R 12169724..12169858 357..491 675 100 Plus
Blast to na_te.dros performed on 2014-11-28 19:34:03 has no hits.

FMO03734.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:13 Download gff for FMO03734.5prime
Subject Subject Range Query Range Percent Splice Strand
SmD3-RA 140..599 32..491 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:33:31 Download gff for FMO03734.5prime
Subject Subject Range Query Range Percent Splice Strand
SmD3-RA 145..604 32..491 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:47 Download gff for FMO03734.5prime
Subject Subject Range Query Range Percent Splice Strand
SmD3-RA 140..599 32..491 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:47 Download gff for FMO03734.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12169725..12169858 358..491 100   Plus
2R 12168870..12169195 32..357 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:13 Download gff for FMO03734.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8056375..8056700 32..357 99 -> Plus
arm_2R 8057230..8057363 358..491 100   Plus