FMO03741.5prime Sequence
1210 bp (1013 high quality bases) assembled on 2008-07-21
> FMO03741.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGAACAGCTAT
TGGCCCAATTACACACTTGCAGTGAGCTGATTGCAGAGGGCTACAGCAGC
ACCGGCAACATTGGCTGGCTGAACGAGTTCTGCGCCACTTTCCTGGACTT
CGCCAGCGATCTGAAGGCTAGGCTGCCGGAGGTGGCGCCCAGTGGCGCAA
ACCTTGATGTGGAGACCATCTTCCTGTGCCTCACCCAGGTGGTAACCTGC
ATCACCCACCTAGAGCGGACCATCAGCATGGAGGCACCGCATATGACCAG
GCAGCACTTCCTCGACCGCTTGGACTGGTGCTTGCGGCGACTGCTCGTCT
CCTTGACGCAACTGGAAGGCAACGTGACCCCAGTCAAGAACCTAGAGGAT
CACTCCTTCGTTGAGCTCATGGACCTGGCTCTGGACCACTTGGATGACTA
CATGGAGAAGCTGGCCCAGCAGAGAAACAACTCGCTGCACATTCTAGAAG
AGAGCTTCACGGAAGACACCTACCAGCTGGCCAGCATAGTTAATCACATC
GTTCGCCACGCCCTGGCCTTTGCCAATGTGGCCATTCATTCGGACAAGAA
GGCTTTGACGGCTTTGTGCGAGACCTTGCTCGCCGAATGTGCCACTTTCC
ACGAGGAGGCGGGCGAGCCCAACAGTGGTCATCGGAAGCTGGAGGCCCTC
TCCCTGGAACGTGCCCTCTATGCCCTGGAATCCTTTCTCAATGAGGCGCT
GCTGCACTTGCTGTTCGTCAGTCTGATAGATCTGGAAAACGCTTCGGTGG
AGAAGCTAAAGGATGCACTGCAAGGGATCCTGCGGGAGCTCAGAGCTAAT
CTCCGCATTCGACACGAACATGGATCGCATTCAGCAGATTGGGGTTCTGG
CCATAGCCTTCTCGCAGACATCAAAACGAAGACGATTGTCAGAGCTGCCT
GGCCTCACTGGAATCCCTGGATGCGTGCATGTGCCCGCCTCTCAGCTGCA
GAGTCCACTTCATCGCAACACCACGCGGAGTCTTGCAGAGCATTTTAACC
AGGAGCTGCTGATCTTTAGAACGTCATCACGAAATCATCGATAGCTGCCT
CCCTGATCAACACTACTGACTGCTGGGCGAGAAGATCCCGTTACGGACTA
GCAATCTGACCTGAATGGCAAGGGCGAAATGGTGGTGGAATCACTTTCCG
CGCCGTGACG
FMO03741.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:01:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sry-beta-RB | 3300 | CG7938-RB | 1490..2604 | 37..1138 | 5100 | 98.2 | Plus |
| Sry-alpha-RB | 3353 | CG17957-RB | 1543..2657 | 37..1138 | 5100 | 98.2 | Plus |
| Sry-alpha-RA | 1855 | CG17957-RA | 45..1159 | 37..1138 | 5100 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:01:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30041261..30042345 | 37..1112 | 4775 | 98.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:01:10 has no hits.
FMO03741.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:00 Download gff for
FMO03741.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sry-alpha-RA | 42..1170 | 30..1148 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:20:58 Download gff for
FMO03741.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sry-alpha-RA | 44..1172 | 30..1148 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:51 Download gff for
FMO03741.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sry-alpha-RA | 42..1170 | 30..1148 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:51 Download gff for
FMO03741.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30041258..30042386 | 30..1148 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:00 Download gff for
FMO03741.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25866980..25868108 | 30..1148 | 97 | | Plus |
