FMO03744.5prime Sequence
462 bp (462 high quality bases) assembled on 2008-07-21
> FMO03744.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAACGCCAGCCT
CATCTATGAGATACTTATGTATCTGAACTCGTTCTACTTTGGCATGTACG
CCGCCTTCGAAGTGGGCGTGGGCGTTCTTAAGGCGATTAATCTAAACTAC
GGCGAGAACGCGTTGTCCCGGGAGGCCAGCATCCTGCTCTCACTGTGCAT
CATCGAGACCGTGCGCATTGTCTTCGGGCGGAAGAGCAGTCTAAGCGATC
GTGGCTGGCAAGCAACCGCATCCGTAATATTAACACTGCCCAGTCTTGCT
ATTGTTATCTACTTGTGTTGTTTTCAAACCTTTGTTCTCAAACTCGAAAT
TATTCTGAGTGCCTTAATGATCACCCTACAAGGTGCTGAACTAGTCTACG
CCAGCATATTCATTTGTACAATGTGTCGCCCCGTCACATACACCGCAAGC
TTTCTAGACCAT
FMO03744.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8116-RC | 1826 | CG8116-RC | 550..958 | 36..444 | 2045 | 100 | Plus |
| CG8116-RB | 2812 | CG8116-RB | 555..963 | 36..444 | 2045 | 100 | Plus |
| CG8116-RA | 1831 | CG8116-RA | 555..963 | 36..444 | 2045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8717124..8717342 | 36..254 | 1095 | 100 | Plus |
| 3R | 32079331 | 3R | 8717848..8718039 | 253..444 | 960 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:41:32 has no hits.
FMO03744.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:22 Download gff for
FMO03744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8116-RA | 555..967 | 36..450 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:21:31 Download gff for
FMO03744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8116-RA | 564..976 | 36..450 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:11:52 Download gff for
FMO03744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8116-RA | 555..967 | 36..450 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:11:52 Download gff for
FMO03744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8717124..8717341 | 36..253 | 100 | -> | Plus |
| 3R | 8717849..8718043 | 254..450 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:22 Download gff for
FMO03744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4542846..4543063 | 36..253 | 100 | -> | Plus |
| arm_3R | 4543571..4543765 | 254..450 | 98 | | Plus |
