FMO03748.5prime Sequence
1260 bp (1025 high quality bases) assembled on 2008-07-21
> FMO03748.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGGGCTGAAC
GGAAGACGACGATTGTTGGGCTGCGGCCTGGGATTCTTCTGCCTGATCTT
CTGCTCTTACGCCGCGCCAGCATCATTTGAGGATGTGAGCATCTCAAGGG
GTCCGAAATCCTCGATTACCATCAAGGAACAAAGTTCGTTGCAATTGCCC
TGTGACTACCAACTGCCGGATGGGTATCTTCAGAAGAGCAGCGTCATCCT
GCGCTGGCGAAAGGATAGCAAAACGTTGCGTCAAGTAGAGCTGGGCAGGA
TGGACAGCACAACGAGCGAACCACAGCTGGAAACCATGCTGCGGGAGGAT
TCCCGTGTGGCGCTGAGCAAGGACAGTGGCGCCCTGCAATTCACAAGCGT
GCTGGCCAGCGATGCCGGTCAGTATCAGTGCCAGTTGGTCATCGACGACT
CCGTGGCTGCCAGCTCCAGCAGTGGGGTGCTCCTGGTTATTGAGCAACTA
AAGTTCGTGCCACAGCCAACCTCCAAAAACTTGGAGTTGGGAACTCTTAG
TAAGGTCCACTGCAAGGCGCAGGGAACACCTGCTCCACAAGTCAAATGGA
TGAGGGAAACCCAGCTACCTCTCCCTGTTAACGTAACCGATCAGAATGGC
ACGCTGATTTTCAACCAGGTCAGCAACGAGCAACGGGGTCAGTACACCTG
CATCGCCTCCAATAGCCAGGGTCAAATCACGGCCACCGTGTCCATCAATG
TGGTGGTGGCCCCGAAGTTCAGTGTTCCGCCGGAGGGACCCATCGAGGTC
GCAGAAAGCCGGAACTGCCGTGATCCACTGCCAGGCAATCGGAGAGCCAA
AACCCACCATTCAATGGGACAAGGATCTCACCTACTTGAACGAGAATAAC
ACGGATCCGGAACGCTTTTTCCTAATGGAGAACGGAACTCTGGAGATACG
CTATGTTCGGCCAGAGAATGAGGGTCGCTACGGCTTGCAACATTGGCCAG
CAGTTGCGGGCCTTGAAGCGAAGAGGATGTTTTTGCTGTGTTGAAGTCAA
GTTAATTCCGCGTTCAAATTCAATAGTGACCCGGATTTATCATTGTGGAT
CATTTTGCCTTGATTCTGTTACCTTTGTGGCCTGGTGCTTGCCCTTAAGG
TGTTGCTTACCGCTATTTCGTCCGTTTCACCTTGGGCAAGTGCACTTGAA
AATTGGCCATGTTTCATGTGACTCCACGATATGTTTCAGGATCACACAAC
ACATTTCACG
FMO03748.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| otk2-RA | 1968 | CG8964-RA | 380..1538 | 34..1212 | 4970 | 96.1 | Plus |
| otk-RB | 4769 | CG8967-RB | 2250..2541 | 693..985 | 260 | 73.6 | Plus |
| otk-RA | 4671 | CG8967-RA | 2250..2541 | 693..985 | 260 | 73.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12024250..12024745 | 606..111 | 2465 | 99.8 | Minus |
| 2R | 25286936 | 2R | 12023689..12024163 | 1087..605 | 1850 | 96.1 | Minus |
| 2R | 25286936 | 2R | 12024816..12024893 | 111..34 | 375 | 98.7 | Minus |
| 2R | 25286936 | 2R | 12003833..12004124 | 985..693 | 215 | 72.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:40:25 has no hits.
FMO03748.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:56 Download gff for
FMO03748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8964-RA | 374..1330 | 27..985 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:28:21 Download gff for
FMO03748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8964-RA | 372..1328 | 27..985 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:11:09 Download gff for
FMO03748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| otk2-RA | 374..1330 | 27..985 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:11:09 Download gff for
FMO03748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12023784..12024162 | 606..985 | 98 | <- | Minus |
| 2R | 12024251..12024744 | 112..605 | 99 | <- | Minus |
| 2R | 12024816..12024898 | 27..111 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:56 Download gff for
FMO03748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7911289..7911667 | 606..985 | 98 | <- | Minus |
| arm_2R | 7911756..7912249 | 112..605 | 99 | <- | Minus |
| arm_2R | 7912321..7912403 | 27..111 | 95 | | Minus |
