FMO03755.5prime Sequence
800 bp (800 high quality bases) assembled on 2008-07-21
> FMO03755.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGGGCGCCTGTGTA
TGTCGCATGAACCCCGACAACGAGACGATGAGCGTCTCCTCTGCGAGCAT
CTCGCGTCCGGCCAGTGCAGGCATTGCCATGGGTGCGGCGCGCAAGAACC
GACCGCTTTGCCACGAGACTATCAGGTGGCGGTCCGACGTGCCACTGACC
GAGGGTCAGCTGCGGTCCAAGCGGGACGAGTTCTGGGATACTGCGCCGGC
CTTCGACGGTCGCAAGGAGATCTGGGATGCGCTACGGGCGGCAACCACCG
CGGCCGAGGGTCTTGACTTTCAGATGGCCCAGGCCATCCTGGATGGGGCT
AACGTGTCGGTTCCCAATGGCTACCTTACAGAATGCTACGATGAGCTGGG
CACCCAGTACAAAGTGCCCATCTACTGTCTGTCATATCCCATAAATATCG
TAAAGGAGGAGAACGGGCGCGACTCGCCTGCCGAATACTCTGAGCCCGTG
GATGGCGGCACCGATATCTTCTTGAAGCTGCGCATATCATCGACCATGAC
TGATGTTAAACTACCCGTTTACTCCAAGGACACCGTGGGGCAGTGCAAGA
AAAAGCTTCAGGCCGCGGAGGGTGTCGACGCCTGCTGCCAGCGATGGTTC
TACAGCGGAAAACTCCTGGGCGACAAGGTGCCAATCGACGAGTGCAGCAT
ACACCAGGGATATGTGGTGCAGGTGATTGTCAACACGGAGCACTACAACC
ACGACAACAGCACGAGTACAGCGCACGCCAGCGCAAGCTTTCTAGACCAT
FMO03755.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1172-RB | 2443 | CG1172-RB | 260..1006 | 36..782 | 3735 | 100 | Plus |
| CG1172-RC | 4339 | CG1172-RC | 260..1006 | 36..782 | 3735 | 100 | Plus |
| CG1172-RA | 2017 | CG1172-RA | 260..1006 | 36..782 | 3735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5394473..5394727 | 116..370 | 1275 | 100 | Plus |
| 3R | 32079331 | 3R | 5395522..5395764 | 370..612 | 1215 | 100 | Plus |
| 3R | 32079331 | 3R | 5396002..5396177 | 607..782 | 880 | 100 | Plus |
| 3R | 32079331 | 3R | 5394309..5394394 | 36..121 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:24:10 has no hits.
FMO03755.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:49 Download gff for
FMO03755.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1172-RA | 270..1026 | 30..788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:16:47 Download gff for
FMO03755.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1172-RA | 248..1004 | 30..788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:57 Download gff for
FMO03755.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1172-RA | 254..1010 | 30..788 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:57 Download gff for
FMO03755.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5394308..5394393 | 34..120 | 98 | -> | Plus |
| 3R | 5394478..5394727 | 121..370 | 100 | -> | Plus |
| 3R | 5395523..5395763 | 371..611 | 100 | -> | Plus |
| 3R | 5396007..5396181 | 612..788 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:49 Download gff for
FMO03755.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1220030..1220115 | 34..120 | 98 | -> | Plus |
| arm_3R | 1220200..1220449 | 121..370 | 100 | -> | Plus |
| arm_3R | 1221245..1221485 | 371..611 | 100 | -> | Plus |
| arm_3R | 1221729..1221903 | 612..788 | 98 | | Plus |
