FMO03758.5prime Sequence
402 bp (402 high quality bases) assembled on 2008-07-21
> FMO03758.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGAGTGCAGAGC
TGTTCCCATTCTACCCACCTATTCTCAAGCCTGTGGTACTCCTATGCCCC
GGAAAACGTCCCTCTGCCGTACACTCTTTGATTATGGTCCTCTAAACGAT
CCGGTGATCATACTCATAACACTGGCCGTCGTAGTTGGATCCTTTTGCCT
GCTCAGCGGATTCATTTTACTGTGCGTTGTCTCAAAAGCCTGGCAGGATG
AGACTTCCGAGGCCATTCTCCTAATGGCGATTGGCTTCTTCATCACGGCT
TTGTCCTGCGTATCGTGGAAATTGACGCGAGCTCAACGAATTTCCCAGTT
AGTGGATGCCCTCAGCGTAGATAACCAAACCATTGCAAGCTTTCTAGACC
AT
FMO03758.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42662-RC | 1695 | CG42662-RC | 21..369 | 36..384 | 1745 | 100 | Plus |
| CG42662-RB | 2791 | CG42662-RB | 21..369 | 36..384 | 1745 | 100 | Plus |
| CG30080-RC | 1695 | CG30080-RC | 21..369 | 36..384 | 1745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15701379..15701573 | 277..83 | 975 | 100 | Minus |
| 2R | 25286936 | 2R | 15701217..15701324 | 384..277 | 540 | 100 | Minus |
| 2R | 25286936 | 2R | 15701629..15701676 | 83..36 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:55:56 has no hits.
FMO03758.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:09:35 Download gff for
FMO03758.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42662-RC | 11..375 | 25..392 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:23:16 Download gff for
FMO03758.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30080-RA | 9..373 | 25..392 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:44:34 Download gff for
FMO03758.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30080-RC | 11..375 | 25..392 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:44:34 Download gff for
FMO03758.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15701211..15701323 | 278..392 | 97 | <- | Minus |
| 2R | 15701379..15701572 | 84..277 | 100 | <- | Minus |
| 2R | 15701629..15701686 | 25..83 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:09:35 Download gff for
FMO03758.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11588716..11588828 | 278..392 | 97 | <- | Minus |
| arm_2R | 11588884..11589077 | 84..277 | 100 | <- | Minus |
| arm_2R | 11589134..11589191 | 25..83 | 93 | | Minus |
