FMO03759.5prime Sequence
640 bp (640 high quality bases) assembled on 2008-07-21
> FMO03759.5prime
AACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGAGGATT
CGGAAGCCGCATTTAAACGCCACGAGGGTGTGGGACCAAAGGTGAAACAG
GCCTACGAGGAAGCCATTAAACAAATCTTTGCCGACTTGAGCTGCGCAGA
TCTGCAAGCGTGGGATGCCATTTACCAGGAGCACGAGCAATCCGCTCTGG
ACACCGAAAGCATCGTAGATCGCACTCGCAGTCTGATGACCAAGGTTGTG
CTCGAAATGAACCGATGCTTTTTCGCCAGCAACGATGTGCCAAATAAGTT
GCAAACTTTGGAAATGCTCAAGGAACATTTCGCTGCCTACGAGGGCAAGA
AATGGAACGTGAACACTGCAGCACCCGATAAACTAACTCGGCCGCTGCGC
ATGCGATTTTTGGACTTCAGCGTGGAATTCATGGAGCAGCAACTGGCCTC
TCAGGCAAAAGAACTTGAGATTGCTATGGCCAAGAGCAATGCCAATCGCG
AGCGACTCCAACATGTCCATGACAAGCGCCTGAAATTGACTGTCCAAATG
GAGCAGCAATTGTCGCAGTACGAGAAAGTTAAGACAGAACTTATTAAACT
AGGCGAAGCATTGAACGACTTCGCAAGCTTTCTAGACCAT
FMO03759.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:00:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nnf1a-RA | 682 | CG13434-RA | 66..647 | 41..622 | 2895 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:59:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20586803..20587018 | 355..140 | 1080 | 100 | Minus |
| 2R | 25286936 | 2R | 20586257..20586411 | 622..468 | 775 | 100 | Minus |
| 2R | 25286936 | 2R | 20586615..20586730 | 469..354 | 565 | 99.1 | Minus |
| 2R | 25286936 | 2R | 20587073..20587173 | 141..41 | 505 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:00:00 has no hits.
FMO03759.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:13 Download gff for
FMO03759.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nnf1a-RA | 63..657 | 36..630 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:24:06 Download gff for
FMO03759.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nnf1a-RA | 32..626 | 36..630 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:17 Download gff for
FMO03759.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nnf1a-RA | 63..657 | 36..630 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:17 Download gff for
FMO03759.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20586804..20587016 | 142..354 | 100 | <- | Minus |
| 2R | 20587073..20587167 | 47..141 | 100 | <- | Minus |
| 2R | 20586247..20586409 | 470..630 | 98 | <- | Minus |
| 2R | 20586615..20586729 | 355..469 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:13 Download gff for
FMO03759.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16474309..16474521 | 142..354 | 100 | <- | Minus |
| arm_2R | 16474578..16474672 | 47..141 | 100 | <- | Minus |
| arm_2R | 16473752..16473914 | 470..630 | 98 | <- | Minus |
| arm_2R | 16474120..16474234 | 355..469 | 99 | <- | Minus |
