FMO03760.5prime Sequence
721 bp (721 high quality bases) assembled on 2008-07-21
> FMO03760.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAGCTCGAGCA
GAGCGAGGAACGGCCCCACGCTTAATTTCAAGGCGGTGCTGCTGGGCGAA
GGTTGTGTGGGCAAGACGTCGCTGGTGCTGCGCTACATGGAAGACCGGTT
CAATGCCCAGCACCTAAGCACCCTGCAGGCTTCCTTTGTCAGCCGCAAGA
TGTCCCTGGAGGATGGGAGAAGGGCGCAGTTGAATATTTGGGACACGGCT
GGTCAGGAGCGGTTCCACGCCCTGGGACCCATCTACTATCGCGGCTCCGA
TGGCGCCCTGCTCGTCTATGACATAACGGACCGAGACTCGTTCCAGAAGG
TCAAATCCTGGGTGCGGGAGCTCCGGCAAATGCGCGGCACGGAGATTGCC
TTAATAATCGTCGGCAACAAGACTGATTTGGAGGAACAGCGAGCAGTAAC
GCACGATGAGGCCCTTCAATATGCGCGCACGGTTGGCGCTCAATATGTAG
AAACTTCGGCCAAGGAGAACGAGGGGGTGGCTGAGCTCTTCGAGCTCCTG
ACCCAGCTGATGCTGGAGCAGTTGAGCCAACGGCAACCGGATGCGAGTCC
ACTTCGCCTCCAGAATCCGGATACGGATAACCTTAACAACTCCGATGACT
CGGAGGCCCCGGATCCCGGAGATCCTGCGGGCCAGCGGTCCTGTTGCGGC
ATTGCAAGCTTTCTAGACCAT
FMO03760.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:02:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab21-RC | 1064 | CG17515-RC | 159..824 | 38..703 | 3315 | 99.8 | Plus |
| Rab21-RD | 1050 | CG17515-RD | 145..810 | 38..703 | 3315 | 99.8 | Plus |
| Rab21-RA | 1077 | CG17515-RA | 234..837 | 100..703 | 3020 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:02:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 23012380..23012983 | 703..100 | 3020 | 100 | Minus |
| X | 23542271 | X | 23013041..23013106 | 103..38 | 315 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:02:46 has no hits.
FMO03760.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:00:18 Download gff for
FMO03760.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab21-RD | 141..814 | 30..709 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:22:20 Download gff for
FMO03760.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab21-RC | 150..823 | 30..709 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:36 Download gff for
FMO03760.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab21-RD | 141..814 | 30..709 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:36 Download gff for
FMO03760.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 23012376..23012981 | 102..709 | 99 | <- | Minus |
| X | 23013043..23013110 | 30..101 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:00:18 Download gff for
FMO03760.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 22414212..22414817 | 102..709 | 99 | <- | Minus |
| arm_X | 22414879..22414946 | 30..101 | 93 | | Minus |
