FMO03767.5prime Sequence
1223 bp (1027 high quality bases) assembled on 2008-07-21
> FMO03767.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGCTCGGTTCGGTT
CTGCGACTATGGATACTCTTCGGCTGTTTCTACCGCTTCTTGGCTCTGGC
CGAGGTCCTGCAGGAGTGCGACATTCCCAATGAGACGAAGAGGGGAGTTT
GCCTGGAGGTCAGCAGGTGCAAGGCGTATCTACAGGTGCGGAATGCCACC
AATTTGCCGGCGGAGAAGGTTAATTTCCTGAAGAAGGTGCAGTGCGAGGT
GGAGCAGCAAGTGTCGGAGGCGCAGGGTTCGTACGAATCACTGGTTTGCT
GCCCGGCGAATGGCCAGGATTACCTATTTCCCGTGCTACAATTCTCTAAG
TTCGAGTACCGAAGATTTCTGGATGTTACCGCTCGATTCAAGCGGAAGAA
ACTCAAGCGGCGCATTCAAACGGTGGAGCCAAGTTCGGGATTCAATTTAC
TCAATGAGTGCGGCAAACAAGTGACTAATAGGATTTACGGAGGGGAAATC
GCCGAACTGGATGAGTTTCCTTGGCTGGCACTGCTTGTCTACAACTCGAA
TGACTACGGTTGCAGTGGAGCCCTAATCGATGATCGTCATATCCTAACAG
CTGCCCATTGTGTTCAAGGCGAGGGAGTTCGTGATCGCCAAGGATTAAAG
CATGTGCGTTTGGGCGAATTCAACGTGAAAACTGAACCCGACTGCATCGA
GGAGCCAAACTATTTGAGCTGTGCAGACGCCGCTTTGGATATTGCCTACG
AAAAGATCCATGTGCATCCGGAGTACAAGGAGTTCTCGAACTACAAGTAC
AATGACATTGCCATTATCCGGCTAAAGCATCCCGTGTCCTTCACTCACTT
CGTCATGCCCATCTGTTTGCCCAACAAATCCGAGCCACTGACATTGGGCC
GAGGGCCAGATGTTCTCCGTTTCCGGGATGGGGTCGCACGGAATTTATTC
CACAAGTACTTCATCAACATTCATAGTCCCATCAAGCTAAAGCTGCGCAT
TCCGTACGTCTCCAATGGAGACTGCACCAGAATTCTCGAGGGATTCGGGA
TTGCGATTGGGTCCAAGCAAATCTGGTGCCCGCCGAAGAGTTCGCGAGGA
ACGTGTCCGCGACCTCCGGTGACTTCTTGATGTACTTCGATGACAGCACC
TCCGGTTGGTTGACCTACGCTGTCAGCTTACGATTACCAGTGCGCGTATG
GCCGTAGCTCCGCGTGATTACTA
FMO03767.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9737-RA | 1635 | CG9737-RA | 112..1283 | 35..1204 | 5105 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30242683..30243201 | 553..35 | 2580 | 99.8 | Minus |
| 3R | 32079331 | 3R | 30242150..30242443 | 942..647 | 1380 | 99.3 | Minus |
| 3R | 32079331 | 3R | 30242508..30242604 | 646..550 | 485 | 100 | Minus |
| 3R | 32079331 | 3R | 30241754..30241877 | 1075..952 | 435 | 93.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:22:36 has no hits.
FMO03767.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:29:41 Download gff for
FMO03767.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9737-RA | 112..1236 | 35..1160 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:21:33 Download gff for
FMO03767.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9737-RA | 110..1234 | 35..1160 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:48 Download gff for
FMO03767.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9737-RA | 112..1236 | 35..1160 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:48 Download gff for
FMO03767.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30242145..30242443 | 647..948 | 99 | <- | Minus |
| 3R | 30242508..30242604 | 550..646 | 100 | <- | Minus |
| 3R | 30242687..30243201 | 35..549 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:29:41 Download gff for
FMO03767.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26067867..26068165 | 647..948 | 99 | <- | Minus |
| arm_3R | 26068230..26068326 | 550..646 | 100 | <- | Minus |
| arm_3R | 26068409..26068923 | 35..549 | 100 | | Minus |
